View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5247_low_10 (Length: 421)

Name: NF5247_low_10
Description: NF5247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5247_low_10
NF5247_low_10
[»] chr6 (6 HSPs)
chr6 (54-192)||(7972243-7972384)
chr6 (53-192)||(21526905-21527047)
chr6 (54-115)||(2437290-2437351)
chr6 (9-63)||(4666213-4666267)
chr6 (54-115)||(23411026-23411087)
chr6 (125-186)||(6026605-6026668)
[»] chr5 (27 HSPs)
chr5 (58-192)||(17558317-17558453)
chr5 (53-201)||(20202178-20202329)
chr5 (54-172)||(36059559-36059677)
chr5 (359-407)||(38185040-38185088)
chr5 (359-407)||(38213269-38213317)
chr5 (287-363)||(26048002-26048078)
chr5 (66-172)||(32717611-32717718)
chr5 (54-172)||(16366061-16366180)
chr5 (54-115)||(6428579-6428640)
chr5 (54-115)||(17201943-17202004)
chr5 (362-405)||(38190673-38190716)
chr5 (9-63)||(17558182-17558236)
chr5 (9-64)||(14655195-14655250)
chr5 (362-405)||(38180415-38180458)
chr5 (362-405)||(38207639-38207682)
chr5 (362-405)||(38217898-38217941)
chr5 (362-405)||(38455775-38455818)
chr5 (359-393)||(26029306-26029340)
chr5 (359-393)||(38452028-38452062)
chr5 (54-99)||(1584004-1584049)
chr5 (54-115)||(1584194-1584255)
chr5 (54-112)||(14655320-14655380)
chr5 (9-62)||(16365930-16365983)
chr5 (125-194)||(28620613-28620682)
chr5 (54-115)||(39940186-39940246)
chr5 (79-115)||(44595-44631)
chr5 (10-46)||(20202040-20202076)
[»] chr2 (13 HSPs)
chr2 (54-192)||(34424362-34424503)
chr2 (54-189)||(4958966-4959104)
chr2 (58-115)||(27746984-27747041)
chr2 (54-172)||(12412958-12413078)
chr2 (54-172)||(12425018-12425138)
chr2 (54-115)||(7485760-7485821)
chr2 (9-62)||(4959182-4959235)
chr2 (9-62)||(25965457-25965510)
chr2 (9-63)||(7485904-7485958)
chr2 (9-63)||(34424582-34424636)
chr2 (11-64)||(27746851-27746904)
chr2 (125-191)||(33660692-33660760)
chr2 (14-46)||(33660060-33660092)
[»] chr1 (8 HSPs)
chr1 (54-192)||(11237580-11237720)
chr1 (54-192)||(31622763-31622904)
chr1 (75-193)||(1674237-1674356)
chr1 (9-62)||(2656077-2656130)
chr1 (54-115)||(39387028-39387089)
chr1 (54-172)||(41117482-41117601)
chr1 (75-115)||(2656229-2656269)
chr1 (128-172)||(4395536-4395580)
[»] chr4 (11 HSPs)
chr4 (54-194)||(38433825-38433967)
chr4 (56-172)||(55344079-55344197)
chr4 (54-115)||(9808113-9808173)
chr4 (53-115)||(45666799-45666861)
chr4 (53-192)||(37371006-37371151)
chr4 (9-62)||(45635123-45635176)
chr4 (54-172)||(24537912-24538029)
chr4 (53-101)||(24073413-24073461)
chr4 (75-115)||(45634984-45635024)
chr4 (9-63)||(38434044-38434098)
chr4 (74-115)||(47944026-47944067)
[»] chr3 (12 HSPs)
chr3 (54-192)||(7259285-7259427)
chr3 (58-172)||(21959330-21959445)
chr3 (54-115)||(13779163-13779224)
chr3 (54-115)||(27264292-27264353)
chr3 (75-159)||(25841485-25841570)
chr3 (56-192)||(16236976-16237115)
chr3 (9-63)||(7259503-7259557)
chr3 (53-115)||(27817932-27817994)
chr3 (52-115)||(42735084-42735146)
chr3 (18-56)||(25841668-25841706)
chr3 (53-115)||(45667928-45667990)
chr3 (127-172)||(297018-297063)
[»] chr8 (11 HSPs)
chr8 (56-170)||(3443328-3443444)
chr8 (66-194)||(9455590-9455720)
chr8 (53-115)||(7694959-7695021)
chr8 (128-171)||(34039449-34039492)
chr8 (9-63)||(7578000-7578054)
chr8 (54-115)||(34146765-34146826)
chr8 (11-63)||(9455449-9455501)
chr8 (9-64)||(3443522-3443577)
chr8 (81-115)||(2742601-2742635)
chr8 (125-170)||(7577837-7577882)
chr8 (75-115)||(11087679-11087719)
[»] chr7 (22 HSPs)
chr7 (53-192)||(14771015-14771157)
chr7 (53-192)||(15221467-15221609)
chr7 (54-192)||(39434444-39434586)
chr7 (54-192)||(4962536-4962676)
chr7 (54-172)||(15643649-15643767)
chr7 (54-115)||(3835316-3835377)
chr7 (58-192)||(46671618-46671757)
chr7 (75-192)||(25290987-25291108)
chr7 (129-192)||(24393682-24393746)
chr7 (53-172)||(39429934-39430057)
chr7 (54-115)||(39618185-39618246)
chr7 (54-114)||(4678875-4678934)
chr7 (9-63)||(14771233-14771287)
chr7 (9-63)||(15221685-15221739)
chr7 (127-172)||(33258987-33259032)
chr7 (51-114)||(10534489-10534552)
chr7 (9-63)||(46671839-46671893)
chr7 (54-115)||(4567878-4567938)
chr7 (9-62)||(4962754-4962807)
chr7 (54-115)||(16197346-16197406)
chr7 (123-172)||(27061982-27062031)
chr7 (128-172)||(4678952-4678996)
[»] scaffold0097 (1 HSPs)
scaffold0097 (53-162)||(48503-48612)
[»] scaffold1130 (2 HSPs)
scaffold1130 (54-192)||(725-866)
scaffold1130 (9-63)||(594-648)
[»] scaffold0005 (3 HSPs)
scaffold0005 (53-115)||(257279-257341)
scaffold0005 (53-115)||(271926-271989)
scaffold0005 (125-183)||(271850-271910)
[»] scaffold0006 (2 HSPs)
scaffold0006 (9-63)||(46119-46173)
scaffold0006 (9-63)||(46401-46455)
[»] scaffold1986 (1 HSPs)
scaffold1986 (54-115)||(638-699)
[»] scaffold0841 (1 HSPs)
scaffold0841 (54-115)||(4213-4274)


Alignment Details
Target: chr6 (Bit Score: 74; Significance: 8e-34; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 54 - 192
Target Start/End: Complemental strand, 7972384 - 7972243
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatagnnnnnnn-tatgcaaaaatacacttcgttagttttgtg 152  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||||||||| ||||||||        | |||||||||||||||||||| |||||||    
T  7972384 aaagataaaatgtgtgcaaaaaaataggaaattattagtggattaaaatgagggtataatagaaaaaaagtgtgcaaaaatacacttcgttatttttgtg 7972285  T
Q  153 ttaaaattctaaaacgacac--aaaaagaaacggagggagta 192  Q
    |||||||||||||||| |||  ||||||||||||||||||||    
T  7972284 ttaaaattctaaaacgtcacttaaaaagaaacggagggagta 7972243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 53 - 192
Target Start/End: Complemental strand, 21527047 - 21526905
Alignment:
Q  53 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata-gnnnnnnntatgcaaaaatacacttcgttagttttgt 151  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||| | ||||| |       | ||||||||||||||||| || |||||     
T  21527047 aaaagataaagtgtgtgcaaaaaaataggaaattattagtggattaaaatgagggtgtaataggaaaaaagtgtgcaaaaatacacttcgctatttttga 21526948  T
Q  152 gttaaaattctaaaacgacac--aaaaagaaacggagggagta 192  Q
     ||||||||||||||||||||  |||||| |||||||||||||    
T  21526947 tttaaaattctaaaacgacacttaaaaaggaacggagggagta 21526905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 2437351 - 2437290
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||||||||| |||||||| ||||||||| ||||| |||||||||||||| | ||||||||    
T  2437351 aaagataaagtgtgtgcaaaaaaataggaatttattggtggattaaaatgatggtataatag 2437290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 4666213 - 4666267
Alignment:
Q  9 gatatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaag 63  Q
    |||||| |||||||||| |||||| ||||||||||||| ||| | ||||||||||    
T  4666213 gatatgcacaatatttaaaaaattgaaaattgtttgttatgagagaaagataaag 4666267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 23411026 - 23411087
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||| ||||| | |||||| |||||||||  |||| |||||||||||||||| ||||||||    
T  23411026 aaagagaaagtgtatgcaaaaaaataggaatatattggtggattaaaatgagggtataatag 23411087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 6026605 - 6026668
Alignment:
Q  125 tgcaaaaatacacttcgttagttttgtgttaaaattctaaaacgacac--aaaaagaaacggag 186  Q
    |||||| |||||||| | || ||||||||||| |||||||||||||||  |||||| |||||||    
T  6026605 tgcaaacatacactttgctatttttgtgttaatattctaaaacgacacttaaaaaggaacggag 6026668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 58 - 192
Target Start/End: Original strand, 17558317 - 17558453
Alignment:
Q  58 ataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata-gnnnnnnntatgcaaaaatacacttcgttagttttgtgttaa 156  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |       | || |||||||||||||| || |||||||||||    
T  17558317 ataaagtgtgtgcaaa-aaataggaaattattagtggattaaaatgaggatataataggaaaaatgtgtgtaaaaatacacttcgctatttttgtgttaa 17558415  T
Q  157 aattctaaaacgacac--aaaaagaaacggagggagta 192  Q
    ||||||||||||||||  ||||| ||||||||||||||    
T  17558416 aattctaaaacgacacttaaaaaaaaacggagggagta 17558453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 53 - 201
Target Start/End: Original strand, 20202178 - 20202329
Alignment:
Q  53 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatagnnnnnnn-tatgcaaaaatacacttcgttagttttgt 151  Q
    |||||||||||| |||||||| ||||| ||||||||||||| |||||||||||| ||||||||        | ||||||||||||||| | || ||||||    
T  20202178 aaaagataaagtgtgtgcaaaaaaatatgaaattattagtgaattaaaatgagggtataataggaaaaaaatgtgcaaaaatacacttagctatttttgt 20202277  T
Q  152 gttaaaattctaaaacgacac--aaaaagaaacggagggagtaatcattaaa 201  Q
    ||||||||| |||||||||||  |||||| ||||||||||||| ||||||||    
T  20202278 gttaaaattttaaaacgacacttaaaaaggaacggagggagtattcattaaa 20202329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 54 - 172
Target Start/End: Complemental strand, 36059677 - 36059559
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata-gnnnnnnntatgcaaaaatacacttcgttagttttgtg 152  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| |       | || |||||||||||||  || |||||||    
T  36059677 aaagataaagtgtgtgcaaa-aaataggaaattattagtggattaaaatgagggtataataggaaaaaaatgtgaaaaaatacacttcactatttttgtg 36059579  T
Q  153 ttaaaattctaaaacgacac 172  Q
    ||||||||||||| ||||||    
T  36059578 ttaaaattctaaatcgacac 36059559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 359 - 407
Target Start/End: Complemental strand, 38185088 - 38185040
Alignment:
Q  359 ctaatgttgaactaactaatgattcatatttataagtagaaagatatga 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38185088 ctaatgttgaactaactaatgattcatatttataagtagaaagatatga 38185040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 38213269 - 38213317
Alignment:
Q  359 ctaatgttgaactaactaatgattcatatttataagtagaaagatatga 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38213269 ctaatgttgaactaactaatgattcatatttataagtagaaagatatga 38213317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 363
Target Start/End: Original strand, 26048002 - 26048078
Alignment:
Q  287 gaagatattaattcatatcaattatagaccnnnnnnnnnctctcatatcaacatgatagccatatttatctcctaat 363  Q
    |||||||||||| |||||||||||||||||         |||||||||||||||||||||||||||| |||||||||    
T  26048002 gaagatattaatccatatcaattatagaccgtttttgttctctcatatcaacatgatagccatatttttctcctaat 26048078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 172
Target Start/End: Complemental strand, 32717718 - 32717611
Alignment:
Q  66 tgtgcaaagaaat-aggaaattattagtggattaaaatgaggatataatagnnnnnnn-tatgcaaaaatacacttcgttagttttgtgttaaaattcta 163  Q
    |||||||| |||| ||||||||||||||||||||| |||||| ||||||||        | ||||||| ||||||||| || ||||||||||||||||||    
T  32717718 tgtgcaaaaaaattaggaaattattagtggattaacatgagggtataataggaaaaaagtgtgcaaaa-tacacttcgctatttttgtgttaaaattcta 32717620  T
Q  164 aaacgacac 172  Q
    |||||||||    
T  32717619 aaacgacac 32717611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 16366061 - 16366180
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatagnnnnnnn-tatgcaaaaatacacttcgttagttttgtg 152  Q
    ||||||||||| || ||||| | ||| |||||||||||  ||||||||||||| ||||||||        | ||||||||||||||||  || |||||||    
T  16366061 aaagataaagtgtgcgcaaaaatatatgaaattattagaagattaaaatgagggtataataggaaaaaagtttgcaaaaatacacttcactatttttgtg 16366160  T
Q  153 ttaaaattctaaaacgacac 172  Q
    |||||||||| |||||||||    
T  16366161 ttaaaattcttaaacgacac 16366180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 6428579 - 6428640
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||||||||| |||||||| ||||||||| ||||| |||||||||||||| | ||||||||    
T  6428579 aaagataaagtgtgtgcaaaaaaataggaacttattggtggattaaaatgaaggtataatag 6428640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 17202004 - 17201943
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||||||||| |||| ||| ||||||||| ||||| |||||||||||||||| ||||||||    
T  17202004 aaagataaagtttgtgtaaaaaaataggaatttattggtggattaaaatgagggtataatag 17201943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 362 - 405
Target Start/End: Original strand, 38190673 - 38190716
Alignment:
Q  362 atgttgaactaactaatgattcatatttataagtagaaagatat 405  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||    
T  38190673 atgttaaactaactaatcattcatatttataagtagaaagatat 38190716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 17558182 - 17558236
Alignment:
Q  9 gatatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaag 63  Q
    |||||| | ||||||||||||||| ||||||||||||||||| | ||||||||||    
T  17558182 gatatgcataatatttagaaaattgaaaattgtttgttttgaaagaaagataaag 17558236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 14655195 - 14655250
Alignment:
Q  9 gatatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaagt 64  Q
    |||||| ||||||||||||||||| ||||||||||||| ||| | |||||| ||||    
T  14655195 gatatgcacaatatttagaaaattgaaaattgtttgttatgagagaaagattaagt 14655250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 362 - 405
Target Start/End: Complemental strand, 38180458 - 38180415
Alignment:
Q  362 atgttgaactaactaatgattcatatttataagtagaaagatat 405  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||||    
T  38180458 atgttaaactaactaatcattcatatttataagtagaaatatat 38180415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 362 - 405
Target Start/End: Complemental strand, 38207682 - 38207639
Alignment:
Q  362 atgttgaactaactaatgattcatatttataagtagaaagatat 405  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||||    
T  38207682 atgttaaactaactaatcattcatatttataagtagaaatatat 38207639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 362 - 405
Target Start/End: Original strand, 38217898 - 38217941
Alignment:
Q  362 atgttgaactaactaatgattcatatttataagtagaaagatat 405  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||||    
T  38217898 atgttaaactaactaatcattcatatttataagtagaaatatat 38217941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 362 - 405
Target Start/End: Complemental strand, 38455818 - 38455775
Alignment:
Q  362 atgttgaactaactaatgattcatatttataagtagaaagatat 405  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||||    
T  38455818 atgttaaactaactaatcattcatatttataagtagaaatatat 38455775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 393
Target Start/End: Original strand, 26029306 - 26029340
Alignment:
Q  359 ctaatgttgaactaactaatgattcatatttataa 393  Q
    |||||||||||||||||||||||||||||| ||||    
T  26029306 ctaatgttgaactaactaatgattcatattcataa 26029340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 393
Target Start/End: Complemental strand, 38452062 - 38452028
Alignment:
Q  359 ctaatgttgaactaactaatgattcatatttataa 393  Q
    |||||||||||| ||||||||||||||||||||||    
T  38452062 ctaatgttgaacgaactaatgattcatatttataa 38452028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 1584004 - 1584049
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaa 99  Q
    ||||||||||| |||||||| ||||||||| ||||| |||||||||    
T  1584004 aaagataaagtgtgtgcaaaaaaataggaatttattggtggattaa 1584049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 1584194 - 1584255
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||||||||| |||||| | |||||| || ||||  |||||||||||||||| ||||||||    
T  1584194 aaagataaagtgtgtgcagaaaaatagaaatttatcggtggattaaaatgagggtataatag 1584255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 14655320 - 14655380
Alignment:
Q  54 aaagataaagtatgtgcaaagaaata--ggaaattattagtggattaaaatgaggatataa 112  Q
    ||||||||||| |||||||| ||| |  ||||||||||| ||||||||||||||| |||||    
T  14655320 aaagataaagtgtgtgcaaaaaaaaaaaggaaattattaatggattaaaatgagggtataa 14655380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 16365930 - 16365983
Alignment:
Q  9 gatatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaa 62  Q
    |||||| |||||||||||||||||  |||||||||||| ||| | |||||||||    
T  16365930 gatatgcacaatatttagaaaattggaaattgtttgttatgagagaaagataaa 16365983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 28620613 - 28620682
Alignment:
Q  125 tgcaaaaatacacttcgttagttttgtgttaaaattctaaaacgacac--aaaaagaaacggagggagtaat 194  Q
    ||||||||||||| ||||||  ||||||||||  |||||||| |||||  |||||| |||||||||||||||    
T  28620613 tgcaaaaatacacatcgtta--tttgtgttaattttctaaaaagacacttaaaaaggaacggagggagtaat 28620682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 39940246 - 39940186
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    |||||| |||| |||| ||| ||||||||| ||||| |||||||||||||||| ||||||||    
T  39940246 aaagatcaagtgtgtgaaaa-aaataggaatttattggtggattaaaatgagggtataatag 39940186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 44631 - 44595
Alignment:
Q  79 aggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  44631 aggaatttattggtggattaaaatgaggatataatag 44595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 20202040 - 20202076
Alignment:
Q  10 atatgaacaatatttagaaaattaaaaattgtttgtt 46  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  20202040 atatgcacaatatttagaaaattgaaaattgtttgtt 20202076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 192
Target Start/End: Complemental strand, 34424503 - 34424362
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag-nnnnnnntatgcaaaaatacacttcgttagttttgtg 152  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||        | || |||||||||||||| || |||||||    
T  34424503 aaagataaagtgtgtgcaaagaaataggaaattatcagtggattaaaataagggtataatagaaaaaaagtgtgtaaaaatacacttcgctatttttgtg 34424404  T
Q  153 ttaaaattctaaaacgacac--aaaaagaaacggagggagta 192  Q
    |||||||| |||||||||||  |||||| |||||| ||||||    
T  34424403 ttaaaattttaaaacgacacttaaaaaggaacggatggagta 34424362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 189
Target Start/End: Complemental strand, 4959104 - 4958966
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata-gnnnnnnntatgcaaaaatacacttcgttagttttgtg 152  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||||||||| ||||||| |       | |||||| |||||||| | || ||| |||    
T  4959104 aaagataaagtgtgtgcaaaaaaaaaggaaattattagtggattaaaatgagggtataataggaaaaaagtgtgcaaagatacactttgctattttagtg 4959005  T
Q  153 ttaaaattctaaaacgacac--aaaaagaaacggaggga 189  Q
    |||||| |||||||| ||||  |||||| ||||||||||    
T  4959004 ttaaaactctaaaacaacacttaaaaaggaacggaggga 4958966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 27746984 - 27747041
Alignment:
Q  58 ataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  27746984 ataaagtgtgtgcaaaaaaataggaaattattagtggattaaaatgagggtataatag 27747041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 12412958 - 12413078
Alignment:
Q  54 aaagataaagtatgtgcaaagaaat-aggaaattattagtggattaaaatgaggatataatagnnnnnnn-tatgcaaaaatacacttcgttagttttgt 151  Q
    ||||||||||| |||||||| |||| || ||| ||||| ||||||||||||||| ||||||||        | ||||||||||||||||| |  ||||||    
T  12412958 aaagataaagtgtgtgcaaaaaaattagaaaactattaatggattaaaatgagggtataataggaaaaaagtgtgcaaaaatacacttcgctttttttgt 12413057  T
Q  152 gttaaaattctaaaacgacac 172  Q
    |||||||||||||||||||||    
T  12413058 gttaaaattctaaaacgacac 12413078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 12425018 - 12425138
Alignment:
Q  54 aaagataaagtatgtgcaaagaaat-aggaaattattagtggattaaaatgaggatataatagnnnnnnn-tatgcaaaaatacacttcgttagttttgt 151  Q
    ||||||||||| |||||||| |||| || ||| ||||| ||||||||||||||| ||||||||        | ||||||||||||||||| |  ||||||    
T  12425018 aaagataaagtgtgtgcaaaaaaattagaaaactattaatggattaaaatgagggtataataggaaaaaagtgtgcaaaaatacacttcgctttttttgt 12425117  T
Q  152 gttaaaattctaaaacgacac 172  Q
    |||||||||||||||||||||    
T  12425118 gttaaaattctaaaacgacac 12425138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 7485821 - 7485760
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||||||||| | |||||| |||||||||||||||||| ||||||||||||  ||||||||    
T  7485821 aaagataaagtgtatgcaaaaaaataggaaattattagtagattaaaatgagagtataatag 7485760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 4959235 - 4959182
Alignment:
Q  9 gatatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaa 62  Q
    |||||| ||||||||||||||||| ||||||||||||| ||| | |||||||||    
T  4959235 gatatgcacaatatttagaaaattgaaaattgtttgttatgagagaaagataaa 4959182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 25965510 - 25965457
Alignment:
Q  9 gatatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaa 62  Q
    |||||| ||||||||||||||||| ||||||||||||| ||| | |||||||||    
T  25965510 gatatgcacaatatttagaaaattgaaaattgtttgttatgagagaaagataaa 25965457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 7485958 - 7485904
Alignment:
Q  9 gatatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaag 63  Q
    |||||| ||||||||||||||||| ||||| ||||||| ||| | ||||||||||    
T  7485958 gatatgcacaatatttagaaaattcaaaatcgtttgttatgagagaaagataaag 7485904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 34424636 - 34424582
Alignment:
Q  9 gatatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaag 63  Q
    |||||| | ||||||||||||||||||||||||||||| ||| | ||| ||||||    
T  34424636 gatatgcataatatttagaaaattaaaaattgtttgttatgaaagaaaaataaag 34424582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 27746851 - 27746904
Alignment:
Q  11 tatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaagt 64  Q
    |||| ||||||||||||||||| |||||||||||||  || | |||||||||||    
T  27746851 tatgcacaatatttagaaaattgaaaattgtttgttaggagagaaagataaagt 27746904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 33660692 - 33660760
Alignment:
Q  125 tgcaaaaatacacttcgttagttttgtgttaaaattctaaaacgacac--aaaaagaaacggagggagt 191  Q
    ||||||||||||||| | || |||||| |||| |||||||||||||||  |||||| |||||| |||||    
T  33660692 tgcaaaaatacactttgctatttttgtattaatattctaaaacgacacttaaaaaggaacggatggagt 33660760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 33660060 - 33660092
Alignment:
Q  14 gaacaatatttagaaaattaaaaattgtttgtt 46  Q
    ||||||||||||||||||||| |||||||||||    
T  33660060 gaacaatatttagaaaattaacaattgtttgtt 33660092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 54 - 192
Target Start/End: Complemental strand, 11237720 - 11237580
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatagnnnnnnntatgcaaaaatacacttcgttagttttgtgt 153  Q
    ||||||||| | |||||||| |||| | ||||||||||||||||||||||| | ||||||||        |||||||||||||||||  || ||||||||    
T  11237720 aaagataaaatgtgtgcaaaaaaattgaaaattattagtggattaaaatgatggtataataggaaaaaaaatgcaaaaatacacttcactatttttgtgt 11237621  T
Q  154 taaaattctaaaacgacac--aaaaagaaacggagggagta 192  Q
    || ||||||||||||||||  |||||| |||||||||||||    
T  11237620 tataattctaaaacgacacttaaaaagtaacggagggagta 11237580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 54 - 192
Target Start/End: Complemental strand, 31622904 - 31622763
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata-gnnnnnnntatgcaaaaatacacttcgttagttttgtg 152  Q
    ||||||||||| |||||||| ||||||||||||||||||||| ||||||||||  |||||| |       | |||||||||||||||||||| |||||||    
T  31622904 aaagataaagtgtgtgcaaaaaaataggaaattattagtggagtaaaatgagggaataataggagaaaaatgtgcaaaaatacacttcgttatttttgtg 31622805  T
Q  153 ttaaaattctaaaacgacac--aaaaagaaacggagggagta 192  Q
     |||||||||| || |||||  |||||| |||||| ||||||    
T  31622804 ctaaaattctagaatgacacttaaaaaggaacggatggagta 31622763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 75 - 193
Target Start/End: Complemental strand, 1674356 - 1674237
Alignment:
Q  75 aaataggaaattattagtggattaaaatgaggatataatagnnnnnnntatgcaaaaatacacttcgttagttttgtgttaaaattctaaaacgacac-- 172  Q
    |||||||||||||||| || |||||||||||||||| ||||       | | ||||||||||||| |||| |||||||||||||||||||||||||||      
T  1674356 aaataggaaattattattgcattaaaatgaggatatgatagaaaaaa-tgtacaaaaatacactttgttatttttgtgttaaaattctaaaacgacactt 1674258  T
Q  173 aaaaagaaacggagggagtaa 193  Q
    |||||  ||||||||||||||    
T  1674257 aaaaaagaacggagggagtaa 1674237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 2656077 - 2656130
Alignment:
Q  9 gatatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaa 62  Q
    |||||| ||||||||||||||||| ||||||||||||| ||| |||||||||||    
T  2656077 gatatgcacaatatttagaaaatttaaaattgtttgttatgagaaaaagataaa 2656130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 39387028 - 39387089
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||||||||| |||||||| || |||||| ||||| ||||||||||||||| |||||||||    
T  39387028 aaagataaagtgtgtgcaaaaaagtaggaatttattcgtggattaaaatgagaatataatag 39387089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 41117482 - 41117601
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag-nnnnnnntatgcaaaaatacacttcgttagttttgtg 152  Q
    ||||||||||| |||||||| |||||  || ||||| |||||||||||||||| ||||||||         |||||||||||||| ||| |||||| |||    
T  41117482 aaagataaagtgtgtgcaaaaaaataaaaatttattggtggattaaaatgagggtataatagaaaaaaaaaatgcaaaaatacacatcgctagtttggtg 41117581  T
Q  153 ttaaaattctaaaacgacac 172  Q
    ||||  |||||||| |||||    
T  41117582 ttaattttctaaaaagacac 41117601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 2656229 - 2656269
Alignment:
Q  75 aaataggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  2656229 aaataggaaattagtagtggattaaaatgagggtataatag 2656269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 4395580 - 4395536
Alignment:
Q  128 aaaaatacacttcgttagttttgtgttaaaattctaaaacgacac 172  Q
    |||||||||||||| || |||||||||||||||| ||||||||||    
T  4395580 aaaaatacacttcgctatttttgtgttaaaattccaaaacgacac 4395536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 54 - 194
Target Start/End: Complemental strand, 38433967 - 38433825
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata-gnnnnnnntatgcaaaaatacacttcgttagttttgtg 152  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| |       | |||||||||| |||||| || |||||||    
T  38433967 aaagataaagtgtgtgcaaa-aaataggaaattattagtggattaaaatgagggtataataggaaaaaagtttgcaaaaatatacttcgctatttttgtg 38433869  T
Q  153 ttaaaattctaaaacgacac--aaaaagaaacggagggagtaat 194  Q
    |||||||| |||||||||||  |||||| |||| | ||||||||    
T  38433868 ttaaaattttaaaacgacacttaaaaaggaacgaatggagtaat 38433825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 56 - 172
Target Start/End: Original strand, 55344079 - 55344197
Alignment:
Q  56 agataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata--gnnnnnnntatgcaaaaatacacttcgttagttttgtgt 153  Q
    ||||||||| |||||||| | |||||||||||||||||||||||||||||| |||||||          | |||||||||||| |||| || ||||||||    
T  55344079 agataaagtgtgtgcaaaaatataggaaattattagtggattaaaatgagggtataatatgaaaaaaaatgtgcaaaaatacatttcgctatttttgtgt 55344178  T
Q  154 taaaattctaaaacgacac 172  Q
    |||||||||||||||||||    
T  55344179 taaaattctaaaacgacac 55344197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 9808113 - 9808173
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  9808113 aaagataaagtgtgtgcaaa-aaataggaatttattagtggattaaaatgaggatataatag 9808173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 45666799 - 45666861
Alignment:
Q  53 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    |||||||||||| |||||||| ||||||||| ||||| |||||||||||||||| ||||||||    
T  45666799 aaaagataaagtgtgtgcaaaaaaataggaatttattggtggattaaaatgagggtataatag 45666861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 192
Target Start/End: Complemental strand, 37371151 - 37371006
Alignment:
Q  53 aaaagataaagtatgtgcaaagaaatagg-aaattattagtggattaaaatgaggatataatagnnnnnnnta---tgcaaaaatacacttcgttagttt 148  Q
    |||||||||||| |||||||| ||| | | ||||||||||||||||||| ||||| ||||||||        |   | ||||||||||||||  || |||    
T  37371151 aaaagataaagtgtgtgcaaaaaaaaaagtaaattattagtggattaaattgagggtataatagaaaaaaaaagtgttcaaaaatacacttcactatttt 37371052  T
Q  149 tgtgttaaaattctaaaacgacac--aaaaagaaacggagggagta 192  Q
    ||||||||||||||||||||||||  |||||| |||||| ||||||    
T  37371051 tgtgttaaaattctaaaacgacacttaaaaaggaacggatggagta 37371006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 45635176 - 45635123
Alignment:
Q  9 gatatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaa 62  Q
    |||||| ||||||||||||||||| ||||||||||||| ||| |||||||||||    
T  45635176 gatatgcacaatatttagaaaatttaaaattgtttgttatgagaaaaagataaa 45635123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 172
Target Start/End: Complemental strand, 24538029 - 24537912
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatagnnnnnnn--tatgcaaaaatacacttcgttagttttgt 151  Q
    ||||||||||| |||| ||| |||||||||||||||||||||||||| ||| | ||||||||         | ||||||||||||||||| || |||| |    
T  24538029 aaagataaagtgtgtgaaaa-aaataggaaattattagtggattaaa-tgaag-tataataggaaaaaaagtgtgcaaaaatacacttcgctatttttat 24537933  T
Q  152 gttaaaattctaaaacgacac 172  Q
    |||||||||||||||||||||    
T  24537932 gttaaaattctaaaacgacac 24537912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 24073461 - 24073413
Alignment:
Q  53 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaa 101  Q
    |||||||||||| ||||||||||||||| || ||||| |||||||||||    
T  24073461 aaaagataaagtgtgtgcaaagaaatagaaatttattggtggattaaaa 24073413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 45635024 - 45634984
Alignment:
Q  75 aaataggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  45635024 aaataggaaattagtagtggattaaaatgagggtataatag 45634984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 38434098 - 38434044
Alignment:
Q  9 gatatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaag 63  Q
    |||||| |||||||||||||||||  |||||||||||| ||| | ||||||||||    
T  38434098 gatatgcacaatatttagaaaattggaaattgtttgttatgagagaaagataaag 38434044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 47944067 - 47944026
Alignment:
Q  74 gaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    |||||||||| ||||| |||||||||||||||| ||||||||    
T  47944067 gaaataggaatttattggtggattaaaatgagggtataatag 47944026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 54 - 192
Target Start/End: Complemental strand, 7259427 - 7259285
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatagnnnnnnn--tatgcaaaaatacacttcgttagttttgt 151  Q
    |||||||||||  ||||||| |||||  ||||||||||||||||||||||||| ||||||||         | ||||||||||||||| | || ||||||    
T  7259427 aaagataaagtgggtgcaaaaaaataaaaaattattagtggattaaaatgagggtataataggaaaaaaagtgtgcaaaaatacactttgctatttttgt 7259328  T
Q  152 gttaaaattctaaaacgacac--aaaaagaaacggagggagta 192  Q
    |||||||||||||||||||||  |||||| |||||||||||||    
T  7259327 gttaaaattctaaaacgacacttaaaaaggaacggagggagta 7259285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 172
Target Start/End: Complemental strand, 21959445 - 21959330
Alignment:
Q  58 ataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata-gnnnnnnntatgcaaaaatacacttcgttagttttgtgttaa 156  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| |       | |||||||| ||||||||||| |||| ||||||    
T  21959445 ataaagtgtgtgcaaaaaaataggaaattattagtggattaaaatgagggtataataggaaaaaggtgtgcaaaaagacacttcgttatttttatgttaa 21959346  T
Q  157 aattctaaaacgacac 172  Q
    |||| |||||||||||    
T  21959345 aattttaaaacgacac 21959330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 13779163 - 13779224
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||||||||  |||||||| |||||||||||||||||| ||||||||||||| ||||||||    
T  13779163 aaagataaagggtgtgcaaaaaaataggaaattattagtagattaaaatgagggtataatag 13779224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 27264292 - 27264353
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||||| ||| |||||||| ||||||||| ||||| |||||||||||| ||||||||||||    
T  27264292 aaagatatagtgtgtgcaaataaataggaatttattggtggattaaaattaggatataatag 27264353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 25841570 - 25841485
Alignment:
Q  75 aaataggaaattattagtggattaaaatgaggatataatag-nnnnnnntatgcaaaaatacacttcgttagttttgtgttaaaat 159  Q
    ||||||||||||||||||| |||||||||||| ||||||||        | ||||||||||||||| |||| ||||||||||||||    
T  25841570 aaataggaaattattagtgaattaaaatgagggtataatagaaaaaaaatgtgcaaaaatacactttgttatttttgtgttaaaat 25841485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 16237115 - 16236976
Alignment:
Q  56 agataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata-gnnnnnnntatgcaaaaatacacttcgttagttttgtgtt 154  Q
    ||||||||| |||||||  ||||||||| |||||  ||||||||||||||| ||||||| |       | || |||||||||| ||| || |||||||||    
T  16237115 agataaagtgtgtgcaagaaaataggaatttatttatggattaaaatgagggtataataggaagaaaatgtgaaaaaatacacatcgctatttttgtgtt 16237016  T
Q  155 aaaattctaaaacgacac--aaaaagaaacggagggagta 192  Q
    ||  |||||||| |||||  |||||| |||||||||||||    
T  16237015 aattttctaaaaagacacttaaaaaggaacggagggagta 16236976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 7259557 - 7259503
Alignment:
Q  9 gatatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaag 63  Q
    |||||| ||||||||||||||||| ||||||||||||| ||| | ||||||||||    
T  7259557 gatatgcacaatatttagaaaattgaaaattgtttgttatgagagaaagataaag 7259503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 27817932 - 27817994
Alignment:
Q  53 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    |||||||||| | |||||||| ||||||||| ||||| |||||||||||| ||| ||||||||    
T  27817932 aaaagataaaatgtgtgcaaaaaaataggaatttattggtggattaaaataagggtataatag 27817994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 42735146 - 42735084
Alignment:
Q  52 aaaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||||||||||| | |||||| ||||||||| |||||  ||||||||||| ||||||||||||    
T  42735146 aaaaagataaagtgtatgcaaaaaaataggaatttattgatggattaaaat-aggatataatag 42735084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 25841706 - 25841668
Alignment:
Q  18 aatatttagaaaattaaaaattgtttgttttgataaaaa 56  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  25841706 aatatttagaaaattaaaaattgtttgttatgaaaaaaa 25841668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 45667928 - 45667990
Alignment:
Q  53 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    |||||||||||| |||||||  ||||| ||| ||||| |||||||||||||| | ||||||||    
T  45667928 aaaagataaagtgtgtgcaagaaaataagaatttattggtggattaaaatgaaggtataatag 45667990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 297018 - 297063
Alignment:
Q  127 caaaaatacacttcgttagttttgtgttaaaattctaaaacgacac 172  Q
    ||||||||||||||| || ||| ||||||| |||||||||||||||    
T  297018 caaaaatacacttcgctattttggtgttaatattctaaaacgacac 297063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 56 - 170
Target Start/End: Complemental strand, 3443444 - 3443328
Alignment:
Q  56 agataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag--nnnnnnntatgcaaaaatacacttcgttagttttgtgt 153  Q
    ||||||||| |||| |||  ||||||||||||||||||||||||||||||| ||||||||         | ||||||||||||||||| || ||||||||    
T  3443444 agataaagtgtgtgaaaaagaataggaaattattagtggattaaaatgagggtataataggaaaaaaagtgtgcaaaaatacacttcgctatttttgtgt 3443345  T
Q  154 taaaattctaaaacgac 170  Q
    |||||||||||||||||    
T  3443344 taaaattctaaaacgac 3443328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 66 - 194
Target Start/End: Original strand, 9455590 - 9455720
Alignment:
Q  66 tgtgcaaagaaataggaaattattagtggattaaaatgaggatataatagnnnnnnntatgcaaaaatacacttcgttagttttgtgttaaaattctaaa 165  Q
    |||||||| || || ||||||||||||| |||||||||||| ||||||||       | ||||||||||||||| | || ||||||||||||||| ||||    
T  9455590 tgtgcaaaaaagtaagaaattattagtgtattaaaatgagggtataatagaaaaaagtgtgcaaaaatacactttgctatttttgtgttaaaattttaaa 9455689  T
Q  166 acgacac--aaaaagaaacggagggagtaat 194  Q
    | |||||  ||||||||||||||||| ||||    
T  9455690 atgacacttaaaaagaaacggagggaataat 9455720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 7695021 - 7694959
Alignment:
Q  53 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    |||||||||||| |||||||| ||||||||| ||||| || ||||||||||||||||||||||    
T  7695021 aaaagataaagtgtgtgcaaaaaaataggaatttatttgtagattaaaatgaggatataatag 7694959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 34039449 - 34039492
Alignment:
Q  128 aaaaatacacttcgttagttttgtgttaaaattctaaaacgaca 171  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||    
T  34039449 aaaaatacacttcattatttttgtgttaaaattctaaaacgaca 34039492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 7578054 - 7578000
Alignment:
Q  9 gatatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaag 63  Q
    |||||| |||||||||||||||||||||||||||||||  || | ||||||||||    
T  7578054 gatatgcacaatatttagaaaattaaaaattgtttgttaagagagaaagataaag 7578000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 34146765 - 34146826
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||||||| | |||||||| ||||| ||| ||||| |||||||||||||||| ||||||||    
T  34146765 aaagataaaatgtgtgcaaaaaaataagaatttattggtggattaaaatgagggtataatag 34146826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 9455449 - 9455501
Alignment:
Q  11 tatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaag 63  Q
    |||| ||||||||||||||||| ||||| ||||||| ||| ||||||||||||    
T  9455449 tatgcacaatatttagaaaattgaaaatagtttgttatgagaaaaagataaag 9455501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 3443577 - 3443522
Alignment:
Q  9 gatatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaagt 64  Q
    |||||| ||||||||||||||||| ||||||||||||| | | | |||||||||||    
T  3443577 gatatgcacaatatttagaaaattgaaaattgtttgttataagagaaagataaagt 3443522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 2742635 - 2742601
Alignment:
Q  81 gaaattattagtggattaaaatgaggatataatag 115  Q
    |||||||||||||||||||||||||| ||||||||    
T  2742635 gaaattattagtggattaaaatgagggtataatag 2742601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 7577882 - 7577837
Alignment:
Q  125 tgcaaaaatacacttcgttagttttgtgttaaaattctaaaacgac 170  Q
    ||||||||||||||| | || |||| ||||||||||||||||||||    
T  7577882 tgcaaaaatacacttagctatttttatgttaaaattctaaaacgac 7577837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 11087679 - 11087719
Alignment:
Q  75 aaataggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||| ||| ||||| |||||||||||||||||||||||||    
T  11087679 aaataagaatttattggtggattaaaatgaggatataatag 11087719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 53 - 192
Target Start/End: Complemental strand, 14771157 - 14771015
Alignment:
Q  53 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag-nnnnnnntatgcaaaaatacacttcgttagttttgt 151  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||        | || ||||||||||||   || ||||||    
T  14771157 aaaagataaagtgtgtgcaaa-aaataggaaattattagtggattaaaatgagggtataatagagaaaaagtgtgtaaaaatacactttactatttttgt 14771059  T
Q  152 gttaaaattctaaaac-gacac--aaaaagaaacggagggagta 192  Q
    |||||||||||||||| |||||  |||||| |||||||||||||    
T  14771058 gttaaaattctaaaactgacacttaaaaaggaacggagggagta 14771015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 53 - 192
Target Start/End: Complemental strand, 15221609 - 15221467
Alignment:
Q  53 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag-nnnnnnntatgcaaaaatacacttcgttagttttgt 151  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||        | || ||||||||||||   || ||||||    
T  15221609 aaaagataaagtgtgtgcaaa-aaataggaaattattagtggattaaaatgagggtataatagagaaaaagtgtgtaaaaatacactttactatttttgt 15221511  T
Q  152 gttaaaattctaaaac-gacac--aaaaagaaacggagggagta 192  Q
    |||||||||||||||| |||||  |||||| |||||||||||||    
T  15221510 gttaaaattctaaaactgacacttaaaaaggaacggagggagta 15221467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 54 - 192
Target Start/End: Original strand, 39434444 - 39434586
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata-gnnnnnnntatgcaaaaatacacttcgttagttttgtg 152  Q
    ||||||||||| |||||| | |||||||||||||||||| ||||||||| ||| ||||||| |       | ||||||||||||||||| || ||||||     
T  39434444 aaagataaagtgtgtgcacaaaaataggaaattattagtcgattaaaataagggtataataggaaaaaagtgtgcaaaaatacacttcgctatttttgta 39434543  T
Q  153 tt-aaaattctaaaacgacac--aaaaagaaacggagggagta 192  Q
    || ||||||||||||||||||  |||||| |||||||||||||    
T  39434544 ttaaaaattctaaaacgacacttaaaaaggaacggagggagta 39434586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 192
Target Start/End: Complemental strand, 4962676 - 4962536
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata-gnnnnnnntatgcaaaaatacacttcgttagttttgtg 152  Q
    ||||||||||| |||||||| |||||||||||||||||| ||||||||||||| ||||||| |       | || ||||||||| |||  || |||||||    
T  4962676 aaagataaagtgtgtgcaaa-aaataggaaattattagttgattaaaatgagggtataataggaaaaaagtgtgaaaaaatacatttcactatttttgtg 4962578  T
Q  153 ttaaaattctaaaacgacac--aaaaagaaacggagggagta 192  Q
    |||||||||||||||| |||  |||||| |||||||||||||    
T  4962577 ttaaaattctaaaacggcacttaaaaaggaacggagggagta 4962536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 15643649 - 15643767
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatagnnnnnnntatgcaaaaatacacttcgttagttttgtgt 153  Q
    ||||||||| | |||||||| |||||| ||||||||||||||||||||||||| |||||| |       | |||||||||||||||   || ||||||||    
T  15643649 aaagataaaatgtgtgcaaaaaaatagaaaattattagtggattaaaatgagggtataatcgtaaaaaatgtgcaaaaatacacttaactatttttgtgt 15643748  T
Q  154 taaaattctaaaacgacac 172  Q
    |||| ||||||||||||||    
T  15643749 taaatttctaaaacgacac 15643767  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 3835377 - 3835316
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||||||||| |||||||| ||||||||| ||||| |||||||||||||||||||||||||    
T  3835377 aaagataaagtgtgtgcaaaaaaataggaatttattcgtggattaaaatgaggatataatag 3835316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 192
Target Start/End: Complemental strand, 46671757 - 46671618
Alignment:
Q  58 ataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag--nnnnnnntatgcaaaaatacacttcgttagttttgtgtt- 154  Q
    ||||||| |||||||| |||||| ||||||||||||| ||||||||||| ||||||||         | ||||||||||| ||| | || |||||||||     
T  46671757 ataaagtgtgtgcaaaaaaatagaaaattattagtggcttaaaatgagggtataataggaaaaaaattgtgcaaaaataccctttgctatttttgtgtta 46671658  T
Q  155 aaaattctaaaacgacac--aaaaagaaacggagggagta 192  Q
    ||||||||||||||||||  |||||| |||||||||||||    
T  46671657 aaaattctaaaacgacacttaaaaaggaacggagggagta 46671618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 192
Target Start/End: Original strand, 25290987 - 25291108
Alignment:
Q  75 aaataggaaattattagtggattaaaatgaggatataatagnnnnnnnta-tgcaaaaatacacttcgttagttttgtgtt-aaaattctaaaacgacac 172  Q
    |||||||||||||| |||||||||||||||||||  |||||          ||||||||||||||||| || ||||||||| ||||||||||||||||||    
T  25290987 aaataggaaattatcagtggattaaaatgaggatccaataggaaaaatgcgtgcaaaaatacacttcgctatttttgtgttaaaaattctaaaacgacac 25291086  T
Q  173 --aaaaagaaacggagggagta 192  Q
      |||||| |||||||||||||    
T  25291087 ttaaaaaggaacggagggagta 25291108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 24393746 - 24393682
Alignment:
Q  129 aaaatacacttcgttagttttgtgttaaaattctaaaacgacac--aaaaagaaacggagggagta 192  Q
    |||||||||||| ||| |||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  24393746 aaaatacacttcatta-ttttgtgttaaatttctaaaacgacacttaaaaagaaacggagggagta 24393682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 172
Target Start/End: Complemental strand, 39430057 - 39429934
Alignment:
Q  53 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag----nnnnnnntatgcaaaaatacacttcgttagttt 148  Q
    |||||||||||| |||||| | ||||||||||||| |||| ||||||||| ||| ||||||||           | ||||||||||||||||| || |||    
T  39430057 aaaagataaagtgtgtgcacaaaaataggaaattaatagttgattaaaataagggtataatagaaaaaaaaaagtgtgcaaaaatacacttcgctatttt 39429958  T
Q  149 tgtgttaaaattctaaaacgacac 172  Q
    |||||||||||| ||||| |||||    
T  39429957 tgtgttaaaattataaaatgacac 39429934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 39618185 - 39618246
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||||||| |||||||||| ||||| ||| ||||| |||||||||||||||| ||||||||    
T  39618185 aaagataaaatatgtgcaaaaaaataagaatttattggtggattaaaatgagggtataatag 39618246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 4678875 - 4678934
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata 114  Q
    ||||||||||| ||| |||| ||||| |||||| |||||||||||||||||||||||||||    
T  4678875 aaagataaagtgtgtacaaa-aaatatgaaattgttagtggattaaaatgaggatataata 4678934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 14771287 - 14771233
Alignment:
Q  9 gatatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaag 63  Q
    |||||| | ||||||||||||||| ||||||||||||||||| | ||||||||||    
T  14771287 gatatgcataatatttagaaaattgaaaattgtttgttttgagagaaagataaag 14771233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 15221739 - 15221685
Alignment:
Q  9 gatatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaag 63  Q
    |||||| | ||||||||||||||| ||||||||||||||||| | ||||||||||    
T  15221739 gatatgcataatatttagaaaattgaaaattgtttgttttgagagaaagataaag 15221685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 33258987 - 33259032
Alignment:
Q  127 caaaaatacacttcgttagttttgtgttaaaattctaaaacgacac 172  Q
    |||||||||||||||||| ||| ||||||| |||||||||||||||    
T  33258987 caaaaatacacttcgttattttggtgttaatattctaaaacgacac 33259032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 10534552 - 10534489
Alignment:
Q  51 taaaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata 114  Q
    |||||| ||||| | |||||||| ||||||||| ||||| |||||||||||||| | |||||||    
T  10534552 taaaaaaataaaatgtgtgcaaaaaaataggaatttattggtggattaaaatgaaggtataata 10534489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 46671893 - 46671839
Alignment:
Q  9 gatatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaag 63  Q
    |||||| |||||||||| |||||| ||||||||||||| ||| | ||||||||||    
T  46671893 gatatgcacaatatttaaaaaattgaaaattgtttgttatgagataaagataaag 46671839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 4567878 - 4567938
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||||||||| |||||||| ||||| ||| ||| | |||||||||||||||| ||||||||    
T  4567878 aaagataaagtgtgtgcaaa-aaataagaatttagtggtggattaaaatgagggtataatag 4567938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 4962807 - 4962754
Alignment:
Q  9 gatatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaa 62  Q
    |||||| ||||| ||||||||||| ||||||||||||| ||| | |||||||||    
T  4962807 gatatgcacaatttttagaaaattgaaaattgtttgttatgagagaaagataaa 4962754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 16197346 - 16197406
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||||||||| | |||||| ||||||||| |||||  ||||||||||||||| ||||||||    
T  16197346 aaagataaagtttatgcaaa-aaataggaatttattgatggattaaaatgagggtataatag 16197406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 27062031 - 27061982
Alignment:
Q  123 tatgcaaaaatacacttcgttagttttgtgttaaaattctaaaacgacac 172  Q
    |||||||||||| ||||| ||| |||||||||| ||||| ||||||||||    
T  27062031 tatgcaaaaatatacttccttaattttgtgttacaattccaaaacgacac 27061982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 4678952 - 4678996
Alignment:
Q  128 aaaaatacacttcgttagttttgtgttaaaattctaaaacgacac 172  Q
    |||||||||||||| || ||||||||||||||| ||||| |||||    
T  4678952 aaaaatacacttcgctatttttgtgttaaaattataaaatgacac 4678996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 48612 - 48503
Alignment:
Q  53 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatagnnnnnnntatgcaaaaatacacttcgttagttttgtg 152  Q
    |||| ||| ||| |||||||| |||||| ||||||||| ||||||||||||||| ||||||||       | || ||||||||| ||| | | |||||||    
T  48612 aaaaaatatagtgtgtgcaaaaaaatagaaaattattaatggattaaaatgagggtataatagaaaaaaatgtgtaaaaatacaattcataatttttgtg 48513  T
Q  153 ttaaaattct 162  Q
    ||||||||||    
T  48512 ttaaaattct 48503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1130 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold1130
Description:

Target: scaffold1130; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 192
Target Start/End: Original strand, 725 - 866
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatagnnnnnnn--tatgcaaaaatacacttcgttagttttgt 151  Q
    ||||||||| | | |||||| ||| |||||||||||||| ||||||| ||||| ||||||||         | |||||||||||||||  ||| |||| |    
T  725 aaagataaaatgtttgcaaaaaaa-aggaaattattagtagattaaattgagggtataataggaaaaaaagtgtgcaaaaatacacttttttatttttat 823  T
Q  152 gttaaaattctaaaacgacac--aaaaagaaacggagggagta 192  Q
    ||||||||| |||||||||||  |||||| |||||||||||||    
T  824 gttaaaattataaaacgacacttaaaaaggaacggagggagta 866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1130; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 594 - 648
Alignment:
Q  9 gatatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaag 63  Q
    |||||| | ||||||||||||||| ||||||||||||| ||| | ||||||||||    
T  594 gatatgcataatatttagaaaattgaaaattgtttgttatgagagaaagataaag 648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 257279 - 257341
Alignment:
Q  53 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    |||||||||||| |||||||| ||||||||| |||||  |||||||| |||||| ||||||||    
T  257279 aaaagataaagtgtgtgcaaaaaaataggaatttattgatggattaatatgagggtataatag 257341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 271989 - 271926
Alignment:
Q  53 aaaagataaagtatgtgcaaagaaatag-gaaattattagtggattaaaatgaggatataatag 115  Q
    |||||||||||| |||| ||| ||| |  |||||||||||||||||||||||||| ||||||||    
T  271989 aaaagataaagtgtgtgaaaaaaaaaaaagaaattattagtggattaaaatgagggtataatag 271926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 271910 - 271850
Alignment:
Q  125 tgcaaaaatacacttcgttagttttgtgttaaaattctaaaacgacac--aaaaagaaacg 183  Q
    ||||||| ||||||| | || || ||||||||||||||||||||||||  |||||||||||    
T  271910 tgcaaaattacactttgctatttctgtgttaaaattctaaaacgacacttaaaaagaaacg 271850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 46173 - 46119
Alignment:
Q  9 gatatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaag 63  Q
    |||||| | ||||||||||||||| ||||||||||||| ||| | ||||||||||    
T  46173 gatatgcataatatttagaaaattgaaaattgtttgttatgagagaaagataaag 46119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 46455 - 46401
Alignment:
Q  9 gatatgaacaatatttagaaaattaaaaattgtttgttttgataaaaagataaag 63  Q
    |||||| | ||||||||||||||| ||||||||||||| ||| | ||||||||||    
T  46455 gatatgcataatatttagaaaattgaaaattgtttgttatgaaagaaagataaag 46401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1986 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1986
Description:

Target: scaffold1986; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 638 - 699
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||||||||| |||| ||| |||||| || ||||| |||||||||||| ||| ||||||||    
T  638 aaagataaagtgtgtgtaaaaaaatagaaatttattggtggattaaaattagggtataatag 699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0841 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0841
Description:

Target: scaffold0841; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 4274 - 4213
Alignment:
Q  54 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 115  Q
    ||||| ||||| |||||||| ||| |||||  |||| |||||||||||||||| ||||||||    
T  4274 aaagagaaagtgtgtgcaaaaaaaaaggaatatattggtggattaaaatgagggtataatag 4213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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