View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5247_low_12 (Length: 366)
Name: NF5247_low_12
Description: NF5247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5247_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 35128144 - 35127813
Alignment:
| Q |
19 |
tatatcaccctcttcgacctcatcctcacattcctctaaaacaacatttgtgacaccaaactcgaagggttctttaaattcttcactttcatcaaaccct |
118 |
Q |
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| T |
35128144 |
tatatcaccctcttccacctcatctccacattcctctaaaacaacatttgtgacaccaaactcgaagggttctttaaattcttcactttcatcaaaccct |
35128045 |
T |
|
| Q |
119 |
tccataattgtacctccactcatcggcttctcatcatcaagcttatgtggtgaaggttcctcctcagagaaataatcagtgctgtctttctcagaaccat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35128044 |
tccataattgtacctccactcatcggcttctcatcatcaagcttatgtggtgaaggttcctcctcagagaaataatcagtgctgtctttctcagaaccat |
35127945 |
T |
|
| Q |
219 |
tgtactggatgacatcgttggcatcacttgaatgtgataattccggctcgaactcctcgttcacagccctttgcccataatcattatccaatatgacact |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35127944 |
tgtactggatgacatcgttggcatcacttgaatgtgataattccggctcgaactcctcgttcacagccctttgcccataatcattatccaatatcacact |
35127845 |
T |
|
| Q |
319 |
ttcctcgctaacatcaaccatttcattgtctc |
350 |
Q |
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|||||| ||||||||||||||||||||||||| |
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| T |
35127844 |
ttcctcactaacatcaaccatttcattgtctc |
35127813 |
T |
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