View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5247_low_16 (Length: 257)

Name: NF5247_low_16
Description: NF5247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5247_low_16
NF5247_low_16
[»] chr4 (19 HSPs)
chr4 (11-257)||(3671256-3671502)
chr4 (24-158)||(55636898-55637032)
chr4 (20-158)||(52983286-52983424)
chr4 (159-256)||(55619210-55619307)
chr4 (159-256)||(55626514-55626611)
chr4 (159-256)||(55657560-55657657)
chr4 (24-157)||(54861185-54861318)
chr4 (173-257)||(52983086-52983170)
chr4 (167-257)||(55663790-55663880)
chr4 (24-157)||(54629891-54630024)
chr4 (159-256)||(54630127-54630224)
chr4 (165-257)||(54860985-54861077)
chr4 (24-158)||(55663993-55664127)
chr4 (24-158)||(55619406-55619540)
chr4 (24-158)||(55626710-55626844)
chr4 (159-257)||(55637131-55637229)
chr4 (24-158)||(55657756-55657890)
chr4 (24-74)||(51316255-51316305)
chr4 (24-113)||(50190412-50190501)
[»] chr8 (2 HSPs)
chr8 (24-157)||(9891185-9891318)
chr8 (156-257)||(9891426-9891527)
[»] chr2 (2 HSPs)
chr2 (25-158)||(13403306-13403439)
chr2 (159-257)||(13403538-13403636)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 3671502 - 3671256
Alignment:
Q  11 cagagagcagatacaggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgg 110  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3671502 cagagagtagatacaggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgg 3671403  T
Q  111 gcactctctaatgctacatctggcagtacccatgagcaaatcgagtatttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3671402 gcactctctaatgctacatctggcagtacccatgagcaaatcgagtatttggcgagccagggttgcattaagcctctgtgtgatttgctcgtttgctctg 3671303  T
Q  211 atccaaaaattgttactgtctgtttacaatgtcttgagaattttctg 257  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  3671302 atccaaaaattgttactgtctgtttgcaatgtcttgagaattttctg 3671256  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 55636898 - 55637032
Alignment:
Q  24 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 123  Q
    |||||||||||||||||| ||||||||||||| || |||||||||||||||||||| |||||||||| |  ||| ||||| ||||||||||||| |||||    
T  55636898 caggctgttattgaagctagtctgattgcccccctagtcaatcttcttcaaaatgccgagtttgacattgcaaaagaagctgcatgggcactctttaatg 55636997  T
Q  124 ctacatctggcagtacccatgagcaaatcgagtat 158  Q
     |||||||||  ||||||||||||||||| |||||    
T  55636998 ttacatctggtggtacccatgagcaaatcaagtat 55637032  T

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Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 52983424 - 52983286
Alignment:
Q  20 gatacaggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctct 119  Q
    ||||||||||||||||||||||||||||||||| || || ||||||||||||||| |||| |||||||||| |  ||| ||||| |||||||||||||||    
T  52983424 gatacaggctgttattgaagctggtctgattgctcccctagtcaatcttcttcaatatgccgagtttgacattaaaaaagaagctgcatgggcactctct 52983325  T
Q  120 aatgctacatctggcagtacccatgagcaaatcgagtat 158  Q
    |||||||| | | |  |||||| |||||||||| |||||    
T  52983324 aatgctacgtttagtggtacccctgagcaaatcaagtat 52983286  T

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Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 159 - 256
Target Start/End: Complemental strand, 55619307 - 55619210
Alignment:
Q  159 ttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttct 256  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |  ||||||||||||||||    
T  55619307 ttggtgagccatggttgcattaagcctctgtgtgatttgcttgtttgccctgatccaaaaattgtttctgtctgtttagatggtcttgagaattttct 55619210  T

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Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 159 - 256
Target Start/End: Complemental strand, 55626611 - 55626514
Alignment:
Q  159 ttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttct 256  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |  ||||||||||||||||    
T  55626611 ttggtgagccatggttgcattaagcctctgtgtgatttgcttgtttgccctgatccaaaaattgtttctgtctgtttagatggtcttgagaattttct 55626514  T

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Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 159 - 256
Target Start/End: Complemental strand, 55657657 - 55657560
Alignment:
Q  159 ttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttct 256  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |  ||||||||||||||||    
T  55657657 ttggtgagccatggttgcattaagcctctgtgtgatttgcttgtttgccctgatccaaaaattgtttctgtctgtttagatggtcttgagaattttct 55657560  T

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Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 157
Target Start/End: Complemental strand, 54861318 - 54861185
Alignment:
Q  24 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 123  Q
    |||||||| |||||||||||| ||||||| || || |||||||||||||||||||| |||||||||| |  ||| ||||| |||||||||||| ||||||    
T  54861318 caggctgtcattgaagctggtttgattgctcccctagtcaatcttcttcaaaatgctgagtttgacattaaaaaagaagctgcatgggcactcactaatg 54861219  T
Q  124 ctacatctggcagtacccatgagcaaatcgagta 157  Q
    ||||||| ||  ||||||| ||||||||| ||||    
T  54861218 ctacatcaggtggtacccacgagcaaatcaagta 54861185  T

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Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 52983170 - 52983086
Alignment:
Q  173 ttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctg 257  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |||||||||||||| |||||    
T  52983170 ttgcattaagcctctgtgtgatttgcttgtttgccctgatccaaaaattattattgtctgtttagaatgtcttgagaatattctg 52983086  T

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Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 167 - 257
Target Start/End: Complemental strand, 55663880 - 55663790
Alignment:
Q  167 ccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctg 257  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||| ||||||| ||| || |||||||||||||||||    
T  55663880 ccagggttgcattaaacctctgtgtgatttgcttgtttgccctgatccaacaattgttgctgtctgcttagaaggtcttgagaattttctg 55663790  T

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Target: chr4; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 54629891 - 54630024
Alignment:
Q  24 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 123  Q
    ||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||||||||| |  ||||||||  |||  ||||||| ||||||    
T  54629891 caggctgttattgaagctggtctgattgctcccctagtcaatcttcttcaaaatgcagagtttgacattacaaaggaagttgcacaggcactcactaatg 54629990  T
Q  124 ctacatctggcagtacccatgagcaaatcgagta 157  Q
     |||||||||  ||||||| ||||| ||| ||||    
T  54629991 ttacatctggtggtacccacgagcatatcaagta 54630024  T

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Target: chr4; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 54630127 - 54630224
Alignment:
Q  159 ttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttct 256  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| |||||||| ||| || || ||||||||||||||||    
T  54630127 ttggtgagccagggttgcattaagcctctgtgtgatttgctagtttgccctgatccaagaatagttactgtttgtctagaaggtcttgagaattttct 54630224  T

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Target: chr4; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 165 - 257
Target Start/End: Complemental strand, 54861077 - 54860985
Alignment:
Q  165 agccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctg 257  Q
    ||||||||||||||||||||||||||||||||| | |||||| ||||||||| |||||||||||||||| || || ||||||||||| |||||    
T  54861077 agccagggttgcattaagcctctgtgtgatttgatggtttgccctgatccaagaattgttactgtctgtctagaaggtcttgagaatattctg 54860985  T

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Target: chr4; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 55664127 - 55663993
Alignment:
Q  24 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 123  Q
    ||||||||||||||||||||||| ||||| || || || ||||||||||||||||| || |||||   |  ||| ||||| ||||||||| | | |||||    
T  55664127 caggctgttattgaagctggtctaattgctcccctagtaaatcttcttcaaaatgccgattttgaagttcaaaaagaagctgcatgggcattatttaatg 55664028  T
Q  124 ctacatctggcagtacccatgagcaaatcgagtat 158  Q
    ||||||||||| ||||||||||||||||| |||||    
T  55664027 ctacatctggcggtacccatgagcaaatcaagtat 55663993  T

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Target: chr4; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 55619540 - 55619406
Alignment:
Q  24 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 123  Q
    |||||||||||  |||||||||||||||| || || |||||||||||||||||||| ||| |||  | |  ||| ||||| ||||||||||||  |||||    
T  55619540 caggctgttatcaaagctggtctgattgctcccctagtcaatcttcttcaaaatgccgagcttgcgattaaaaaagaagctgcatgggcactccgtaatg 55619441  T
Q  124 ctacatctggcagtacccatgagcaaatcgagtat 158  Q
    |||||||||   |||| |||||||||||| |||||    
T  55619440 ctacatctgatggtactcatgagcaaatcaagtat 55619406  T

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Target: chr4; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 55626844 - 55626710
Alignment:
Q  24 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 123  Q
    ||||||||||| ||||||||||||||||| || || |||||||||||||||||||| ||| |||  | |  ||| ||||| ||||| ||||||  |||||    
T  55626844 caggctgttatcgaagctggtctgattgctcccctagtcaatcttcttcaaaatgccgagcttgcgattaaaaaagaagctgcatgtgcactccgtaatg 55626745  T
Q  124 ctacatctggcagtacccatgagcaaatcgagtat 158  Q
    |||||||||   |||| |||||||||||| |||||    
T  55626744 ctacatctgatggtactcatgagcaaatcaagtat 55626710  T

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Target: chr4; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 55637131 - 55637229
Alignment:
Q  159 ttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctg 257  Q
    |||| |||||| ||||||||||||||||||||||||||||||| |  |  |||||||| |||||||||||| ||| || || |||||||||||||||||    
T  55637131 ttggagagccaaggttgcattaagcctctgtgtgatttgcttgctatccatgatccaagaattgttactgtttgtctagaaggtcttgagaattttctg 55637229  T

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Target: chr4; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 55657890 - 55657756
Alignment:
Q  24 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 123  Q
    |||||||||||  |||||||||||||||| || || |||||||||||||||||||| ||| |||  | |  ||| ||||| ||||||||||||  |||||    
T  55657890 caggctgttatcaaagctggtctgattgctcccctagtcaatcttcttcaaaatgccgagcttgcgattaaaaaagaagctgcatgggcactccgtaatg 55657791  T
Q  124 ctacatctggcagtacccatgagcaaatcgagtat 158  Q
    |||||||||   |||| |||||||||||| |||||    
T  55657790 ctacatctgatggtactcatgagcaaatcaagtat 55657756  T

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Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 51316255 - 51316305
Alignment:
Q  24 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaa 74  Q
    ||||||||||||||||||||||| ||||| || |||||| |||||||||||    
T  51316255 caggctgttattgaagctggtctcattgctcccctggtcgatcttcttcaa 51316305  T

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Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 50190501 - 50190412
Alignment:
Q  24 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggca 113  Q
    |||||||||||||| || ||||| ||||| || || ||||  |||||||||||||| |||||||||| |  ||| ||||| |||||||||    
T  50190501 caggctgttattgatgccggtcttattgctccacttgtcagacttcttcaaaatgcagagtttgacattaaaaaagaagctgcatgggca 50190412  T

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Target: chr8 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 9891185 - 9891318
Alignment:
Q  24 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9891185 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 9891284  T
Q  124 ctacatctggcagtacccatgagcaaatcgagta 157  Q
    ||||||||||||||||||||||||||||||||||    
T  9891285 ctacatctggcagtacccatgagcaaatcgagta 9891318  T

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Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 156 - 257
Target Start/End: Original strand, 9891426 - 9891527
Alignment:
Q  156 tatttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttc 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9891426 tatttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgaggattttc 9891525  T
Q  256 tg 257  Q
    ||    
T  9891526 tg 9891527  T

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Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 13403306 - 13403439
Alignment:
Q  25 aggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatgc 124  Q
    |||||||||||||||| || |||||||| |||||||||||||||||||||||||| || ||||||| |  ||| ||||| |||||||||||||| |||||    
T  13403306 aggctgttattgaagccggactgattgctcctctggtcaatcttcttcaaaatgccgaatttgacattaaaaaagaagctgcatgggcactctccaatgc 13403405  T
Q  125 tacatctggcagtacccatgagcaaatcgagtat 158  Q
    |||||||||| ||||||||||||||||| |||||    
T  13403406 tacatctggcggtacccatgagcaaatcaagtat 13403439  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 13403538 - 13403636
Alignment:
Q  159 ttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctg 257  Q
    |||| ||||||||||||||||||||||||||||||| | ||||||||| | ||||||| ||||||||| ||||||||| || ||||||||||| |||||    
T  13403538 ttggtgagccagggttgcattaagcctctgtgtgatcttcttgtttgccccgatccaagaattgttaccgtctgtttagaaggtcttgagaatattctg 13403636  T

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