View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5247_low_18 (Length: 251)

Name: NF5247_low_18
Description: NF5247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5247_low_18
NF5247_low_18
[»] chr3 (31 HSPs)
chr3 (12-188)||(4169039-4169214)
chr3 (1-121)||(42637956-42638076)
chr3 (10-128)||(1705663-1705781)
chr3 (2-128)||(22432320-22432446)
chr3 (1-121)||(19280187-19280306)
chr3 (1-121)||(31545605-31545725)
chr3 (18-121)||(26308640-26308743)
chr3 (1-128)||(3785951-3786078)
chr3 (1-128)||(3823640-3823768)
chr3 (12-128)||(42481300-42481416)
chr3 (9-120)||(44080254-44080364)
chr3 (13-110)||(5341877-5341974)
chr3 (2-107)||(9710738-9710842)
chr3 (1-78)||(11509892-11509969)
chr3 (8-121)||(19624302-19624414)
chr3 (25-102)||(27335402-27335479)
chr3 (24-112)||(13358101-13358189)
chr3 (1-127)||(27707663-27707788)
chr3 (36-128)||(34627292-34627384)
chr3 (25-102)||(27365008-27365085)
chr3 (3-83)||(23163321-23163400)
chr3 (51-113)||(11501309-11501371)
chr3 (25-102)||(27326047-27326124)
chr3 (25-102)||(27332284-27332361)
chr3 (37-112)||(39126189-39126263)
chr3 (37-103)||(27079314-27079380)
chr3 (37-103)||(27085111-27085177)
chr3 (43-93)||(23163787-23163837)
chr3 (1-73)||(41571832-41571904)
chr3 (67-105)||(11509989-11510027)
chr3 (156-231)||(3823797-3823869)
[»] chr5 (17 HSPs)
chr5 (1-128)||(35922721-35922848)
chr5 (1-128)||(22169446-22169573)
chr5 (8-128)||(13312594-13312714)
chr5 (1-125)||(33958976-33959100)
chr5 (8-128)||(42034753-42034872)
chr5 (1-105)||(38521984-38522087)
chr5 (2-113)||(43461709-43461820)
chr5 (37-113)||(19621481-19621557)
chr5 (36-99)||(43262708-43262771)
chr5 (25-102)||(30704398-30704476)
chr5 (8-60)||(36169394-36169446)
chr5 (25-102)||(7156105-7156182)
chr5 (22-106)||(31189588-31189671)
chr5 (49-104)||(30045885-30045940)
chr5 (60-128)||(2477302-2477370)
chr5 (66-121)||(15221618-15221673)
chr5 (156-198)||(19621613-19621655)
[»] chr1 (15 HSPs)
chr1 (8-128)||(29677078-29677198)
chr1 (1-128)||(29167803-29167929)
chr1 (2-111)||(25238467-25238575)
chr1 (1-128)||(34490177-34490304)
chr1 (1-113)||(42604207-42604319)
chr1 (8-113)||(34364228-34364332)
chr1 (3-128)||(38951896-38952023)
chr1 (11-128)||(5831531-5831648)
chr1 (25-101)||(2996025-2996101)
chr1 (12-112)||(517421-517522)
chr1 (64-128)||(2569960-2570024)
chr1 (2-102)||(9468099-9468199)
chr1 (74-113)||(9929739-9929778)
chr1 (25-102)||(5855130-5855205)
chr1 (156-231)||(5855250-5855322)
[»] chr6 (19 HSPs)
chr6 (1-112)||(33815025-33815136)
chr6 (1-126)||(10304695-10304820)
chr6 (16-128)||(138708-138820)
chr6 (16-128)||(146729-146841)
chr6 (8-128)||(22608356-22608476)
chr6 (1-111)||(3222420-3222530)
chr6 (14-120)||(3620761-3620867)
chr6 (17-128)||(9068411-9068521)
chr6 (64-128)||(2430600-2430664)
chr6 (28-101)||(9474646-9474718)
chr6 (24-119)||(2834974-2835069)
chr6 (10-121)||(23595152-23595253)
chr6 (159-231)||(2430498-2430568)
chr6 (156-225)||(11108067-11108133)
chr6 (156-232)||(2835108-2835181)
chr6 (1-50)||(11108147-11108196)
chr6 (64-121)||(20084678-20084735)
chr6 (64-128)||(7706862-7706926)
chr6 (64-104)||(24386283-24386323)
[»] chr2 (8 HSPs)
chr2 (1-126)||(43900517-43900642)
chr2 (8-229)||(1400667-1400887)
chr2 (8-121)||(30906051-30906164)
chr2 (2-113)||(45305957-45306067)
chr2 (25-201)||(33667328-33667506)
chr2 (1-128)||(28527316-28527442)
chr2 (2-128)||(7378463-7378586)
chr2 (48-102)||(34175155-34175209)
[»] chr7 (17 HSPs)
chr7 (1-128)||(31303442-31303569)
chr7 (2-112)||(20556756-20556866)
chr7 (1-128)||(4290816-4290942)
chr7 (2-128)||(21589613-21589739)
chr7 (2-128)||(21548442-21548568)
chr7 (8-128)||(18312823-18312942)
chr7 (3-126)||(22740654-22740776)
chr7 (16-121)||(28804990-28805094)
chr7 (1-121)||(5083792-5083911)
chr7 (25-102)||(46943761-46943839)
chr7 (21-121)||(15958313-15958416)
chr7 (25-102)||(32964775-32964852)
chr7 (56-121)||(5174910-5174975)
chr7 (25-112)||(27523496-27523583)
chr7 (18-60)||(2887188-2887230)
chr7 (156-227)||(28804882-28804950)
chr7 (25-81)||(22033095-22033151)
[»] chr8 (17 HSPs)
chr8 (1-121)||(38606828-38606948)
chr8 (1-128)||(5321955-5322082)
chr8 (1-111)||(5573769-5573879)
chr8 (1-111)||(26493347-26493456)
chr8 (2-100)||(29367076-29367174)
chr8 (8-128)||(31273555-31273675)
chr8 (2-121)||(1240901-1241019)
chr8 (1-128)||(15714688-15714815)
chr8 (1-128)||(1251470-1251596)
chr8 (25-102)||(15233241-15233318)
chr8 (1-112)||(31596784-31596894)
chr8 (1-58)||(33286206-33286263)
chr8 (1-87)||(32959549-32959635)
chr8 (21-112)||(6809804-6809895)
chr8 (66-121)||(24575907-24575962)
chr8 (24-121)||(24537982-24538078)
chr8 (1-45)||(24575974-24576018)
[»] chr4 (17 HSPs)
chr4 (1-100)||(9809063-9809162)
chr4 (10-128)||(1966826-1966943)
chr4 (1-112)||(9810749-9810860)
chr4 (1-128)||(16583585-16583712)
chr4 (1-125)||(17633337-17633461)
chr4 (8-121)||(33249616-33249729)
chr4 (19-121)||(19596789-19596891)
chr4 (8-121)||(33179759-33179872)
chr4 (3-103)||(8740809-8740908)
chr4 (1-112)||(2433701-2433811)
chr4 (8-119)||(42908564-42908675)
chr4 (8-103)||(55666844-55666938)
chr4 (17-103)||(35544438-35544523)
chr4 (19-128)||(14351069-14351178)
chr4 (25-102)||(24669197-24669274)
chr4 (2-59)||(20874823-20874880)
chr4 (3-41)||(1966978-1967016)
[»] scaffold1126 (1 HSPs)
scaffold1126 (8-128)||(202-322)
[»] scaffold0123 (1 HSPs)
scaffold0123 (1-121)||(24021-24140)
[»] scaffold0251 (1 HSPs)
scaffold0251 (10-113)||(10623-10726)
[»] scaffold0043 (1 HSPs)
scaffold0043 (25-102)||(87035-87112)
[»] scaffold0024 (1 HSPs)
scaffold0024 (25-102)||(112158-112235)
[»] scaffold0291 (1 HSPs)
scaffold0291 (25-102)||(5870-5947)
[»] scaffold0126 (1 HSPs)
scaffold0126 (1-52)||(21549-21600)


Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 4169214 - 4169039
Alignment:
Q  12 ttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaaa 111  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4169214 ttgcgtgaccactatttagaagctgaaaaatgtggtaacgcaactaaaatgtgcgtgaccactatttttccatttagttaaccaaataaattctgaaaaa 4169115  T
Q  112 atggtggtcatgcaactgnnnnnnntgaggtcatgcataccatattggttaactgaaatttttcagaatagtacaaa 188  Q
    || || ||||||||||||       |||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  4169114 atagtagtcatgcaactg-aaaaaatgaggtcacgcataccatattggttaactgaaatttttcagagtagtacaaa 4169039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 42638076 - 42637956
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  | ||||||||||||||||    
T  42638076 cattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtaaccactatttttcaacttagttaaccaaataa 42637977  T
Q  101 attctgaaaaaatggtggtca 121  Q
    ||||||||||||| |||||||    
T  42637976 attctgaaaaaatagtggtca 42637956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 1705781 - 1705663
Alignment:
Q  10 agttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaa 109  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |  |||||||||||||||| ||||| ||    
T  1705781 agttgcgtgaccactatttagaagctgaaaaatatggtcatgcaactaaaatgcgcgtgaccactatttttccccttagttaaccaaataatttctggaa 1705682  T
Q  110 aaatggtggtcatgcaact 128  Q
    || | |||||||| |||||    
T  1705681 aactagtggtcatacaact 1705663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 128
Target Start/End: Original strand, 22432320 - 22432446
Alignment:
Q  2 attttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaa 101  Q
    ||||| ||||||||||| |||||||||| |||||||||||||||||||  ||||||||||||| ||| ||||||||||| ||  ||||| ||||||||||    
T  22432320 attttttcagttgcgtgtccactatttaaaagctgaaaaatgtggtcaatcaactaaaatgcgtgtgtccactatttttccacatagttgaccaaataaa 22432419  T
Q  102 ttctgaaaaaatggtggtcatgcaact 128  Q
    || ||||||||| ||||||||||||||    
T  22432420 ttatgaaaaaatagtggtcatgcaact 22432446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 19280187 - 19280306
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||| |||| || ||||||||||||||||    
T  19280187 cattttttcagatgcgtgaccactgtttagaagttgaaaaatgtggtcacgcaactaaaattcgcgtgaccacta-ttttccacttagttaaccaaataa 19280285  T
Q  101 attctgaaaaaatggtggtca 121  Q
    ||| ||||||| | |||||||    
T  19280286 attttgaaaaattagtggtca 19280306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 31545605 - 31545725
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| ||||||| || |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||  | ||||||||| ||||||    
T  31545605 cattttttcagttgagtaaccactatttagaagctgaaaaatgtggtcacacaactaaaatgtgcatgaccactatttttctacttagttaacaaaataa 31545704  T
Q  101 attctgaaaaaatggtggtca 121  Q
    |||||| |||||| |||||||    
T  31545705 attctggaaaaatagtggtca 31545725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 26308743 - 26308640
Alignment:
Q  18 gaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaatggtg 117  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| || ||| |||||||||||||||||| |||| | |||    
T  26308743 gaccactatttagaagctgaataatgtggtcacgcaattaaaatgcgcgtgaccactatttttccacttacttaaccaaataaattctggaaaattagtg 26308644  T
Q  118 gtca 121  Q
    ||||    
T  26308643 gtca 26308640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 3785951 - 3786078
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaa-tgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaata 99  Q
    |||||| || ||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| ||||| || |||||||||||||||    
T  3785951 cattttttctgttacgtgaccactatttataagctgaaaaaatatggtcacgcaactaaaatgcgcgtgaccact-tttttccacttagttaaccaaata 3786049  T
Q  100 aattctgaaaaaatggtggtcatgcaact 128  Q
    |||| || |||||| ||||||| ||||||    
T  3786050 aattatggaaaaatagtggtcacgcaact 3786078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 3823640 - 3823768
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaa--tgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaat 98  Q
    |||||| || ||||||||||||||||||| |||||||||||  | ||||||||||||||||||||| ||||||||| ||||| || ||||||||||||||    
T  3823640 cattttttctgttgcgtgaccactatttataagctgaaaaaaatatggtcacgcaactaaaatgcgtgtgaccact-tttttccacttagttaaccaaat 3823738  T
Q  99 aaattctgaaaaaatggtggtcatgcaact 128  Q
    ||||| || |||||| ||||||| ||||||    
T  3823739 aaattatggaaaaatagtggtcacgcaact 3823768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 42481300 - 42481416
Alignment:
Q  12 ttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaaa 111  Q
    |||||||||||||||||| || ||||||||| ||||||| |||||||||||  |||||||| |||||||  | |||||||||||||||||||||||||||    
T  42481300 ttgcgtgaccactatttaaaaactgaaaaatatggtcacacaactaaaatgtacgtgaccattatttttctacttagttaaccaaataaattctgaaaaa 42481399  T
Q  112 atggtggtcatgcaact 128  Q
    ||  |||||||| ||||    
T  42481400 ataatggtcatgtaact 42481416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 44080254 - 44080364
Alignment:
Q  9 cagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaa 108  Q
    ||||||||||||||||||||||||| ||||||||||||||||  |||||||||| ||||| ||||||||||| || ||||||||||||| ||||| || |    
T  44080254 cagttgcgtgaccactatttagaagttgaaaaatgtggtcac-aaactaaaatgtgcgtgcccactatttttccacttagttaaccaaaaaaattttgga 44080352  T
Q  109 aaaatggtggtc 120  Q
    ||||| ||||||    
T  44080353 aaaatagtggtc 44080364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 5341877 - 5341974
Alignment:
Q  13 tgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaa 110  Q
    ||||||||||||||||||||| |||||||||||||||  |||||||||| |   |||||||||||||| || ||||||||||||||||||||||||||    
T  5341877 tgcgtgaccactatttagaagttgaaaaatgtggtcatacaactaaaatacatatgaccactatttttccacttagttaaccaaataaattctgaaaa 5341974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 9710842 - 9710738
Alignment:
Q  2 attttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaa 101  Q
    ||||| || ||||||||||||||| |||||||||||||| ||||||||||||||| |||| | | |||||||||||||| || |||||||||||||||||    
T  9710842 attttttcggttgcgtgaccactacttagaagctgaaaactgtggtcacgcaact-aaatacacttgaccactatttttccacttagttaaccaaataaa 9710744  T
Q  102 ttctga 107  Q
    ||||||    
T  9710743 ttctga 9710738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 11509892 - 11509969
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattt 78  Q
    |||||| ||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11509892 cattttttcacttgcgtgacctttatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgacccctattt 11509969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 19624302 - 19624414
Alignment:
Q  8 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctga 107  Q
    ||||||| ||||||| |||||| ||||| ||| |||||| ||| |||||||||||| |||||||||||||||| || ||||||||||| ||||||||||     
T  19624302 tcagttgtgtgacca-tatttataagctaaaatatgtggccacccaactaaaatgcacgtgaccactatttttccacttagttaaccacataaattctgg 19624400  T
Q  108 aaaaatggtggtca 121  Q
    |||||| |||||||    
T  19624401 aaaaattgtggtca 19624414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 27335479 - 27335402
Alignment:
Q  25 atttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaat 102  Q
    |||||||||||||||||||||||||| |||||||||| | |||||||||||||||| || ||||||||||||||||||    
T  27335479 atttagaagctgaaaaatgtggtcacacaactaaaatacacgtgaccactatttttccacttagttaaccaaataaat 27335402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 13358189 - 13358101
Alignment:
Q  24 tatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaa 112  Q
    ||||||||||||||||||| ||||||| ||| |||||||||||| |||||||||||| ||  |||||||||||||||||| ||||||||    
T  13358189 tatttagaagctgaaaaatatggtcacacaattaaaatgcgcgttaccactatttttccacatagttaaccaaataaattttgaaaaaa 13358101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 27707663 - 27707788
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| ||| ||| |||||||| |||| ||| || |||||||||||| | ||||||||||| || ||||||||||||||||| ||  ||||||||||||    
T  27707663 cattttttcaattgtgtgaccac-attttgaaactaaaaaatgtggtcgcacaactaaaatgtgcatgaccactattttttcacttgattaaccaaataa 27707761  T
Q  101 attctgaaaaaatggtggtcatgcaac 127  Q
    |||||| |||||| |||| ||||||||    
T  27707762 attctggaaaaatagtggacatgcaac 27707788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 34627384 - 34627292
Alignment:
Q  36 gaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaatggtggtcatgcaact 128  Q
    |||||||||||||||||||||||||| |  || |||| ||||||| |||||||||||||||||||||||  ||||||| || |||| ||||||    
T  34627384 gaaaaatgtggtcacgcaactaaaatacatgtaaccattatttttccatttagttaaccaaataaattcgaaaaaaatagtagtcacgcaact 34627292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 27365085 - 27365008
Alignment:
Q  25 atttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaat 102  Q
    |||||||| ||||||||||| |||||||| ||||||| || ||||||||||||||| || ||| ||||||||||||||    
T  27365085 atttagaaactgaaaaatgtagtcacgcagctaaaatacgtgtgaccactatttttccacttaattaaccaaataaat 27365008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 23163321 - 23163400
Alignment:
Q  3 ttttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttca 83  Q
    ||||||||||||| |||||||||| |||| |||||||||| ||||||| |||||||||||| ||||| || ||||||||||    
T  23163321 ttttatcagttgcatgaccactatgtaga-gctgaaaaatatggtcacacaactaaaatgcacgtgatcattattttttca 23163400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 11501309 - 11501371
Alignment:
Q  51 gcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaat 113  Q
    |||||||||||| ||||||||||||||||| || ||||||||||||||||||| | |||||||    
T  11501309 gcaactaaaatgtgcgtgaccactatttttccaattagttaaccaaataaattttaaaaaaat 11501371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 27326124 - 27326047
Alignment:
Q  25 atttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaat 102  Q
    |||||||| || ||||||||||||||||||||||||| |  ||||||||||||||| || || |||||| ||||||||    
T  27326124 atttagaaactaaaaaatgtggtcacgcaactaaaatacatgtgaccactatttttccagttggttaactaaataaat 27326047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 27332361 - 27332284
Alignment:
Q  25 atttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaat 102  Q
    |||||||| || ||||||||||||||||||||||||| |  ||||||||||||||| || || |||||| ||||||||    
T  27332361 atttagaaactaaaaaatgtggtcacgcaactaaaatacatgtgaccactatttttccagttggttaactaaataaat 27332284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 39126189 - 39126263
Alignment:
Q  37 aaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaa 112  Q
    ||||||||||| |||||||||||| ||||| || |||||||||| || ||||||||||||||||||| | ||||||    
T  39126189 aaaaatgtggttacgcaactaaaa-gcgcgcgatcactatttttccacttagttaaccaaataaattttaaaaaaa 39126263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 27079380 - 27079314
Alignment:
Q  37 aaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaatt 103  Q
    ||||||||||||||| | ||||||||||||||||||  |||||| || |||||||| ||||||||||    
T  27079380 aaaaatgtggtcacgtagctaaaatgcgcgtgaccatcatttttccacttagttaatcaaataaatt 27079314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 27085177 - 27085111
Alignment:
Q  37 aaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaatt 103  Q
    ||||||||||||||| | ||||||||||||||||||  |||||| || |||||||| ||||||||||    
T  27085177 aaaaatgtggtcacgtagctaaaatgcgcgtgaccatcatttttccacttagttaatcaaataaatt 27085111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 23163787 - 23163837
Alignment:
Q  43 gtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaac 93  Q
    ||||||||||||||||||||  |||||||||||||| |||| |||||||||    
T  23163787 gtggtcacgcaactaaaatgtacgtgaccactatttcttcacttagttaac 23163837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 41571832 - 41571904
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccac 73  Q
    |||||| |||||| ||||||||||||||| ||| ||||||||||| |||| ||  |||||||  |||||||||    
T  41571832 cattttttcagttacgtgaccactatttaaaagttgaaaaatgtgatcacacagttaaaatgtacgtgaccac 41571904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 11509989 - 11510027
Alignment:
Q  67 tgaccactattttttcatttagttaaccaaataaattct 105  Q
    ||||||||||||||||| ||||||||| |||||||||||    
T  11509989 tgaccactattttttcaattagttaactaaataaattct 11510027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 3823797 - 3823869
Alignment:
Q  156 ttggttaactgaaatttttcagaatagtacaaatgaatgtacatatcattaagggtgcctacctatcattgctctt 231  Q
    ||||||||||| |||||||| || ||||||||| |  || ||||   |||||||||| ||||||||||||||||||    
T  3823797 ttggttaactggaatttttctgagtagtacaaacgggtgaacat---attaagggtgtctacctatcattgctctt 3823869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 35922721 - 35922848
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||    
T  35922721 cattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgtatgaccactatttttccatttagttaaccaaataa 35922820  T
Q  101 attctgaaaaaatggtggtcatgcaact 128  Q
    ||||||||||||| ||||||||||||||    
T  35922821 attctgaaaaaatagtggtcatgcaact 35922848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 22169446 - 22169573
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||||||    
T  22169446 cattttttcagttgcgtgaccactatttataagttgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactatttttcaacgtagttaaccaaataa 22169545  T
Q  101 attctgaaaaaatggtggtcatgcaact 128  Q
    ||| |||||||||  |||||| ||||||    
T  22169546 attttgaaaaaataatggtcacgcaact 22169573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 13312594 - 13312714
Alignment:
Q  8 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctga 107  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| || ||||||||||||||||||| ||     
T  13312594 tcagttgggtgaccgctatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtggcaactatttttccacttagttaaccaaataaattatgg 13312693  T
Q  108 aaaaatggtggtcatgcaact 128  Q
    |||||| ||||||| ||||||    
T  13312694 aaaaatagtggtcacgcaact 13312714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 33959100 - 33958976
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| |||| |||||||||||||||||||| ||||||||| |||||||||||||||||| || || |||||||||||| || |||||| |||||||||    
T  33959100 cattttttcagctgcgtgaccactatttagaaactgaaaaatatggtcacgcaactaaaatccgagtaaccactatttttccacttagttgaccaaataa 33959001  T
Q  101 attctgaaaaaatggtggtcatgca 125  Q
    |||||| |||||| |||||||||||    
T  33959000 attctggaaaaattgtggtcatgca 33958976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 42034753 - 42034872
Alignment:
Q  8 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctga 107  Q
    |||||||||||||  ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||| ||     
T  42034753 tcagttgcgtgactcctatt-agaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccacttagttaaccaaataaattttgg 42034851  T
Q  108 aaaaatggtggtcatgcaact 128  Q
    |||| | ||||||| ||||||    
T  42034852 aaaactagtggtcacgcaact 42034872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 38522087 - 38521984
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| ||| |||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || ||||||||| ||||||    
T  38522087 cattttttcaattgcatgaccactatttagaagctgaaaaatgtggtcacgcga-taaaatgcgcgtgaccactatttttacacttagttaactaaataa 38521989  T
Q  101 attct 105  Q
    |||||    
T  38521988 attct 38521984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 43461820 - 43461709
Alignment:
Q  2 attttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaa 101  Q
    ||||| ||||||| |||||||||||||||||| ||||||||  ||||||||||||||||| | ||| |||||||||||| || ||||| |||||||||||    
T  43461820 attttttcagttgtgtgaccactatttagaagttgaaaaatacggtcacgcaactaaaattcacgtaaccactatttttccacttagtaaaccaaataaa 43461721  T
Q  102 ttctgaaaaaat 113  Q
    ||||||||||||    
T  43461720 ttctgaaaaaat 43461709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 19621557 - 19621481
Alignment:
Q  37 aaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaat 113  Q
    ||||| |||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||| ||||||    
T  19621557 aaaaacgtggtcacgcaactaaaatgtgcgtgaccactatttttccacttagttaaccaaataaattctggaaaaat 19621481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 43262771 - 43262708
Alignment:
Q  36 gaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaata 99  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||    
T  43262771 gaaaaatgtggtcacacaactaaaatgcgcgtgaccactatttttccacttagttaaccaaata 43262708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 30704476 - 30704398
Alignment:
Q  25 atttagaagctgaaaaa-tgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaat 102  Q
    ||||| ||||||||||| ||||||| | ||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  30704476 atttaaaagctgaaaaaatgtggtcgcacaactaaaatgcgcgtgaccactatttttccacttagttaaccaaataaat 30704398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 36169446 - 36169394
Alignment:
Q  8 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaa 60  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36169446 tcagttgcgtgaccactatttagaagctgaaaaatatggtcacgcaactaaaa 36169394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 7156105 - 7156182
Alignment:
Q  25 atttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaat 102  Q
    ||||||||||||||||||||| || ||||||||||||  ||||||||| ||||||| || ||| ||||||||||||||    
T  7156105 atttagaagctgaaaaatgtgatcgcgcaactaaaatatgcgtgaccattatttttccacttaattaaccaaataaat 7156182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 31189588 - 31189671
Alignment:
Q  22 actatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctg 106  Q
    |||||||||||||||||||||||| ||||||||||||||||   |||||||||| |||| || || ||||| |||||||||||||    
T  31189588 actatttagaagctgaaaaatgtgatcacgcaactaaaatgtttgtgaccacta-ttttccacttggttaatcaaataaattctg 31189671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 30045885 - 30045940
Alignment:
Q  49 acgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattc 104  Q
    ||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||    
T  30045885 acgcaactaaaatacgcgtgaccactatttttccatttaattaaccaaataaattc 30045940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 2477302 - 2477370
Alignment:
Q  60 atgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaatggtggtcatgcaact 128  Q
    ||||||||| |||||||||||  | |||||||||||||||||||||| |||||| |||| || ||||||    
T  2477302 atgcgcgtggccactatttttcgacttagttaaccaaataaattctgtaaaaatagtggccacgcaact 2477370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 15221618 - 15221673
Alignment:
Q  66 gtgaccactattttttcatttagttaaccaaataaattctgaaaaaatggtggtca 121  Q
    ||||||||| ||||| || ||| ||||| ||||||||||||||||||| |||||||    
T  15221618 gtgaccactctttttccacttaattaactaaataaattctgaaaaaatagtggtca 15221673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 19621613 - 19621655
Alignment:
Q  156 ttggttaactgaaatttttcagaatagtacaaatgaatgtaca 198  Q
    ||||||||||||||||||||||||| ||||||| || ||||||    
T  19621613 ttggttaactgaaatttttcagaatggtacaaaggagtgtaca 19621655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 29677198 - 29677078
Alignment:
Q  8 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctga 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||    
T  29677198 tcagttgagtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgtgcgtgaccactatttttccacttagttaaccaaataaattctga 29677099  T
Q  108 aaaaatggtggtcatgcaact 128  Q
    |||||| ||||||||||||||    
T  29677098 aaaaatagtggtcatgcaact 29677078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 29167929 - 29167803
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| |||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||| |||||||||||||| || ||||||||||||||||    
T  29167929 cattttttcagttgcgtgaccactatttagaagctaaaaaatatggtcacgcaa-taaaatgcgcatgaccactatttttccacttagttaaccaaataa 29167831  T
Q  101 attctgaaaaaatggtggtcatgcaact 128  Q
    |||| |||||| | ||||||| ||||||    
T  29167830 attccgaaaaactagtggtcaggcaact 29167803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 25238467 - 25238575
Alignment:
Q  2 attttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaa 101  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||| || ||||||| |||| |||||||||||| || |||||||||||||||||    
T  25238467 attttttcagttgcgtgaccactatttagaagctaaaaaatgtggtcacgtaa-taaaatgtgcgtaaccactatttttccacttagttaaccaaataaa 25238565  T
Q  102 ttctgaaaaa 111  Q
    ||||||||||    
T  25238566 ttctgaaaaa 25238575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 34490177 - 34490304
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| |||||||  ||||||||||||||||||| ||||||||||||| |||| |||||||||| ||||||||||||||  | ||||||||||||||||    
T  34490177 cattttttcagttgtatgaccactatttagaagctaaaaaatgtggtcatgcaa-taaaatgcgcatgaccactatttttctagttagttaaccaaataa 34490275  T
Q  101 attctgaaaaaa-tggtggtcatgcaact 128  Q
    |||||||||||| | ||||||| ||||||    
T  34490276 attctgaaaaaactagtggtcacgcaact 34490304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 42604207 - 42604319
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| |||||||| | ||||||||||||||||| |||| | ||||||  ||||||||||||||||||||||||||||| || ||||||||| ||||||    
T  42604207 cattttttcagttgcatcaccactatttagaagcttaaaagtatggtcatacaactaaaatgcgcgtgaccactatttttccacttagttaacgaaataa 42604306  T
Q  101 attctgaaaaaat 113  Q
    |||||||||||||    
T  42604307 attctgaaaaaat 42604319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 34364228 - 34364332
Alignment:
Q  8 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctga 107  Q
    ||||||||||| ||| |||||||||||||||| |||||||||| |||||||||||  ||||||||| ||||||||| ||||||||||||| ||||||||     
T  34364228 tcagttgcgtggcca-tatttagaagctgaaacatgtggtcacacaactaaaatgaacgtgaccacaattttttcacttagttaaccaaaaaaattctgg 34364326  T
Q  108 aaaaat 113  Q
    ||||||    
T  34364327 aaaaat 34364332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 38951896 - 38952023
Alignment:
Q  3 ttttatcagttgcgtgaccactatttagaagctgaaaaa--tgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||| |||| |||||||||||||||||||| ||||||||  | | |||||||||||||||||||  ||||||||||||||  | ||||||||||||||||    
T  38951896 ttttttcagctgcgtgaccactatttagaaactgaaaaaaatatagtcacgcaactaaaatgcgtctgaccactatttttctacttagttaaccaaataa 38951995  T
Q  101 attctgaaaaaatggtggtcatgcaact 128  Q
    ||| || | |||| ||||||| ||||||    
T  38951996 attttggagaaatagtggtcaagcaact 38952023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 5831531 - 5831648
Alignment:
Q  11 gttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaa 110  Q
    ||||| ||||||||||||||||| | |||||| ||||| || ||||||||||||  | ||||| |||||| || |||||||||||||||||||||| |||    
T  5831531 gttgcatgaccactatttagaagttaaaaaatatggtcccgtaactaaaatgcgtattaccacaatttttccacttagttaaccaaataaattctggaaa 5831630  T
Q  111 aatggtggtcatgcaact 128  Q
    | | ||||||| ||||||    
T  5831631 attagtggtcacgcaact 5831648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 2996025 - 2996101
Alignment:
Q  25 atttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaa 101  Q
    |||||||||||||||||||||||||||||| ||||||||||||| || |||||||| |  |||||||||||||||||    
T  2996025 atttagaagctgaaaaatgtggtcacgcaaataaaatgcgcgtggccgctatttttccgcttagttaaccaaataaa 2996101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 517522 - 517421
Alignment:
Q  12 ttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaat-aaattctgaaaa 110  Q
    |||||| ||||||||||||||| | |||||| || ||||||||||||||||  | |||| |||||||||| | |||||||||||||| ||||||||||||    
T  517522 ttgcgtaaccactatttagaagttaaaaaatatgatcacgcaactaaaatgaacatgactactattttttaacttagttaaccaaataaaattctgaaaa 517423  T
Q  111 aa 112  Q
    ||    
T  517422 aa 517421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 2569960 - 2570024
Alignment:
Q  64 gcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaatggtggtcatgcaact 128  Q
    ||||||||||||||||| || |||||||||||||||||||||  |||||| ||||||| ||||||    
T  2569960 gcgtgaccactatttttccacttagttaaccaaataaattctagaaaaatagtggtcacgcaact 2570024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 9468099 - 9468199
Alignment:
Q  2 attttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttt-tcatttagttaaccaaataa 100  Q
    ||||| |||||||  |||||| |||||| |||||| |||||||| |||| |||||||||||   ||||| |||||||||  || ||||||||||||||||    
T  9468099 attttttcagttgtctgacca-tatttaaaagctgtaaaatgtgatcacacaactaaaatgtatgtgactactatttttgccacttagttaaccaaataa 9468197  T
Q  101 at 102  Q
    ||    
T  9468198 at 9468199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 9929778 - 9929739
Alignment:
Q  74 tattttttcatttagttaaccaaataaattctgaaaaaat 113  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  9929778 tatttttccatttagttaaccaaataaattttgaaaaaat 9929739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 5855130 - 5855205
Alignment:
Q  25 atttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaat 102  Q
    ||||| ||||| ||| |||||||||| |||||||||| ||  ||||  |||||||| |||||| ||||||||||||||    
T  5855130 atttaaaagctaaaatatgtggtcacacaactaaaatacg--tgacgtctatttttccatttaattaaccaaataaat 5855205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 5855250 - 5855322
Alignment:
Q  156 ttggttaactgaaatttttcagaatagtacaaatgaatgtacatatcattaagggtgcctacctatcattgctctt 231  Q
    |||||||||| |||||||||||| | ||||||| || |||||||   ||||  |||| ||||||||||||||||||    
T  5855250 ttggttaacttaaatttttcagagtggtacaaaagagtgtacat---attagtggtgtctacctatcattgctctt 5855322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 33815136 - 33815025
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||    
T  33815136 cattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccaccatttttccacttagttaaccaaataa 33815037  T
Q  101 attctgaaaaaa 112  Q
    ||||||||||||    
T  33815036 attctgaaaaaa 33815025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 10304820 - 10304695
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| |||||||||||| |||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10304820 cattttttcagttgcgtgatcactatttagaagcagaaaaatacggtcacgcaactaaaatgcgcgtgaccactattttttcacttagttaaccaaataa 10304721  T
Q  101 attctgaaaaaatggtggtcatgcaa 126  Q
    |||||| |||||  ||||||| ||||    
T  10304720 attctggaaaaaaagtggtcacgcaa 10304695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 138820 - 138708
Alignment:
Q  16 gtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaatgg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| || ||||| ||||||||||||||||||||||| |    
T  138820 gtgaccactatttagaagctgaaaaatgtggtcacgcaactaaattgtgcgcgaccactatttttccacttagtcaaccaaataaattctgaaaaaatag 138721  T
Q  116 tggtcatgcaact 128  Q
    |||||| ||||||    
T  138720 tggtcacgcaact 138708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 146841 - 146729
Alignment:
Q  16 gtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaatgg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| || ||||| ||||||||||||||||||||||| |    
T  146841 gtgaccactatttagaagctgaaaaatgtggtcacgcaactaaattgtgcgcgaccactatttttccacttagtcaaccaaataaattctgaaaaaatag 146742  T
Q  116 tggtcatgcaact 128  Q
    |||||| ||||||    
T  146741 tggtcacgcaact 146729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 22608356 - 22608476
Alignment:
Q  8 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctga 107  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||| | |||||||| ||||||| ||||||    
T  22608356 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcatgcaactaaaatgtgcatgaccactattttttgaattagttaatcaaataatttctga 22608455  T
Q  108 aaaaatggtggtcatgcaact 128  Q
    |||| | ||||||| ||||||    
T  22608456 aaaattagtggtcacgcaact 22608476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 3222420 - 3222530
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| |||||||||||||||||||||| | ||||||||||| ||||||||||||||||||  |||||||||||||||| || ||||||||||||||||    
T  3222420 cattttttcagttgcgtgaccactatttaaatgctgaaaaatgcggtcacgcaactaaaatgtacgtgaccactatttttccacttagttaaccaaataa 3222519  T
Q  101 attctgaaaaa 111  Q
    |||||| ||||    
T  3222520 attctggaaaa 3222530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 3620867 - 3620761
Alignment:
Q  14 gcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaat 113  Q
    |||||| ||||||||||||| ||||||||||| |||| ||||||||||    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  3620867 gcgtgatcactatttagaagttgaaaaatgtgatcacacaactaaaatatatgtgaccactattttttcacttagttaaccaaataaattctgaaaaaat 3620768  T
Q  114 ggtggtc 120  Q
     ||||||    
T  3620767 agtggtc 3620761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 9068411 - 9068521
Alignment:
Q  17 tgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaatggt 116  Q
    ||||||||||||| |||||||||||||||||||| || |||||||||||||||  ||||||||| || |||| ||| ||||||| ||||| |||||| ||    
T  9068411 tgaccactatttaaaagctgaaaaatgtggtcacacatctaaaatgcgcgtgattactatttttccacttag-taaacaaataagttctggaaaaatagt 9068509  T
Q  117 ggtcatgcaact 128  Q
    ||||| ||||||    
T  9068510 ggtcacgcaact 9068521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 2430664 - 2430600
Alignment:
Q  64 gcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaatggtggtcatgcaact 128  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||    
T  2430664 gcgtgaccactatttttccacttagttaaccaaataaattctgaaaaaatagtggtcatgcaact 2430600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 9474646 - 9474718
Alignment:
Q  28 tagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaa 101  Q
    |||||||| ||||||||||||||| || ||||||||| |||||||||||||||||| |||||||||||||||||    
T  9474646 tagaagctaaaaaatgtggtcacgaaa-taaaatgcgtgtgaccactattttttcacttagttaaccaaataaa 9474718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 2834974 - 2835069
Alignment:
Q  24 tatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaatggtggt 119  Q
    |||||| |||||||||||| |||||| ||||||||||| |||||||||| ||||||| || |||| |||| ||||||||| || |||||| |||||    
T  2834974 tatttaaaagctgaaaaatatggtcatgcaactaaaatacgcgtgaccattatttttccacttagctaactaaataaattatggaaaaatagtggt 2835069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 23595152 - 23595253
Alignment:
Q  10 agttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaa 109  Q
    ||||| ||||| |||||||||||||||||||||||||||||        ||  |||||| ||||||||||| || ||||||||| |||||||||||||||    
T  23595152 agttgtgtgacaactatttagaagctgaaaaatgtggtcac--------aa--cgcgtggccactatttttccacttagttaacaaaataaattctgaaa 23595241  T
Q  110 aaatggtggtca 121  Q
    || | |||||||    
T  23595242 aattagtggtca 23595253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 2430568 - 2430498
Alignment:
Q  159 gttaactgaaattttt-cagaatagtacaaatgaatgtacatatcattaagggtgcctacctatcattgctctt 231  Q
    |||||||||||||||| |||||| ||||||| |||||||||   ||||||||||| ||||||||| || |||||    
T  2430568 gttaactgaaattttttcagaatggtacaaaggaatgtaca---cattaagggtgtctacctatcgttactctt 2430498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 11108133 - 11108067
Alignment:
Q  156 ttggttaactgaaatttttcagaatagtacaaatgaatgtacatatcattaagggtgcctacctatcatt 225  Q
    |||||||| |||||||||||||| |||||||| ||||||||||   ||||||| ||| ||||||| ||||    
T  11108133 ttggttaattgaaatttttcagagtagtacaagtgaatgtaca---cattaagagtgtctacctaccatt 11108067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 2835108 - 2835181
Alignment:
Q  156 ttggttaactgaaatttttcagaatagtacaaatgaatgtacatatcattaagggtgcctacctatcattgctcttt 232  Q
    |||||||||| |||||||||||| | ||||||||  || ||||   |||||||| || |||||||||||||||||||    
T  2835108 ttggttaacttaaatttttcagagtggtacaaattgatataca---cattaaggctgtctacctatcattgctcttt 2835181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 11108196 - 11108147
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcac 50  Q
    |||||| ||||||||||||||||| |  | ||||||||||||||||||||    
T  11108196 cattttttcagttgcgtgaccactgtcaataagctgaaaaatgtggtcac 11108147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 20084678 - 20084735
Alignment:
Q  64 gcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaatggtggtca 121  Q
    |||||| ||||| ||||||| ||||||||||||||||||||  ||| ||| |||||||    
T  20084678 gcgtgatcactactttttcacttagttaaccaaataaattcaaaaataatagtggtca 20084735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 7706862 - 7706926
Alignment:
Q  64 gcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaatggtggtcatgcaact 128  Q
    ||||||||||||||||| || |||  ||||||||||| ||||| |||||| || |||| ||||||    
T  7706862 gcgtgaccactatttttccacttaagtaaccaaataagttctggaaaaatagttgtcacgcaact 7706926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 24386323 - 24386283
Alignment:
Q  64 gcgtgaccactattttttcatttagttaaccaaataaattc 104  Q
    |||||| ||||| ||||||| ||||||||||||||||||||    
T  24386323 gcgtgatcactactttttcacttagttaaccaaataaattc 24386283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 43900517 - 43900642
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||    
T  43900517 cattttttcagttgtgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttctatttagttaaccaaataa 43900616  T
Q  101 attctgaaaaaatggtggtcatgcaa 126  Q
    ||||||||||||| | ||||| ||||    
T  43900617 attctgaaaaaataggggtcacgcaa 43900642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 1400887 - 1400667
Alignment:
Q  8 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| || ||||||||||||||||||| ||     
T  1400887 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcacacaacaaaaatgcgcgtgatcactatttttccacttagttaaccaaataaattatgg 1400788  T
Q  108 aaaaatggtggtcatgcaactgnnnnnnntgaggtcatgcataccata---ttggttaactgaaatttttcagaatagtacaaatgaatgtacatatcat 204  Q
    |||||| ||||||| ||||||        || |||||  |||||||||   ||||||||||||||||||||||| | ||||||| |  ||||||   |||    
T  1400787 aaaaatagtggtcacgcaact-taaaaaatgtggtcacacataccatatatttggttaactgaaatttttcagattggtacaaaagggtgtaca---cat 1400692  T
Q  205 taagggtgcctacctatcattgctc 229  Q
    |||||||| |||||||| |||||||    
T  1400691 taagggtgtctacctattattgctc 1400667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 30906164 - 30906051
Alignment:
Q  8 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctga 107  Q
    |||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| ||     
T  30906164 tcagtttcgtgaccactatttaaatgctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactatttttccacttagttaagcaaataaattatgg 30906065  T
Q  108 aaaaatggtggtca 121  Q
    ||| || |||||||    
T  30906064 aaacatagtggtca 30906051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 45305957 - 45306067
Alignment:
Q  2 attttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaa 101  Q
    ||||| |||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||| || |||||||||| ||||||    
T  45305957 attttttcagttgcgtgaccac-atttaaaagctgaaaaatgtggccacgcaactaaaatgtgcgtgaccactatttttccacttagttaaccgaataaa 45306055  T
Q  102 ttctgaaaaaat 113  Q
    |||| |||||||    
T  45306056 ttctaaaaaaat 45306067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 25 - 201
Target Start/End: Original strand, 33667328 - 33667506
Alignment:
Q  25 atttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaatggtggtcatgc 124  Q
    ||||||||| |||||||||||||||||||| ||||||| |||| |||||||||||| || ||||||||||||||| ||||||||||||| ||||||| ||    
T  33667328 atttagaagttgaaaaatgtggtcacgcaattaaaatgtgcgtaaccactatttttccacttagttaaccaaatatattctgaaaaaatagtggtcacgc 33667427  T
Q  125 aactgnnnnnnntgaggtcatgcataccata---ttggttaactgaaatttttcagaatagtacaaatgaatgtacatat 201  Q
    ||||        || | |||| |||||||||   |||||||||| |||||||||||| | ||||||| || |||||||||    
T  33667428 aact-taaaaaatgtgttcatacataccatatatttggttaactaaaatttttcagagtggtacaaaagagtgtacatat 33667506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 28527442 - 28527316
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| | |||||||||||||  |||||||||||| ||||||| |||||| |||||| ||||| ||||||||||||||| || ||||||||||||||||    
T  28527442 catttttttagttgcgtgaccataatttagaagctggaaaatgttgtcacg-aactaacatgcgtgtgaccactatttttccaattagttaaccaaataa 28527344  T
Q  101 attctgaaaaaatggtggtcatgcaact 128  Q
    |||||| |||||| ||||||| ||||||    
T  28527343 attctggaaaaatagtggtcacgcaact 28527316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 128
Target Start/End: Complemental strand, 7378586 - 7378463
Alignment:
Q  2 attttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaa 101  Q
    ||||| |||||||||| ||||| ||||||||||| |||||| |||| |||||||||||||| | |||||||||||| || || ||| |||||| | ||||    
T  7378586 attttttcagttgcgtaaccac-atttagaagct-aaaaatatggtgacgcaactaaaatgtgtgtgaccactattattccacttaattaacc-attaaa 7378490  T
Q  102 ttctgaaaaaatggtggtcatgcaact 128  Q
    || | ||||||| || |||| ||||||    
T  7378489 ttttaaaaaaatagtagtcacgcaact 7378463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 34175155 - 34175209
Alignment:
Q  48 cacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaat 102  Q
    ||||||||||||||| | |||||  |||||||| || ||||||||||||||||||    
T  34175155 cacgcaactaaaatgtgtgtgactgctatttttccacttagttaaccaaataaat 34175209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 31303442 - 31303569
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| || ||||||||||||||||    
T  31303442 cattttttcaattgcgtgaccactatttagaagctgaaaaatgtggtcatgcaactaaaatgtgcgtgaccactatttttccacttagttaaccaaataa 31303541  T
Q  101 attctgaaaaaatggtggtcatgcaact 128  Q
    |||||| ||| || ||||||| ||||||    
T  31303542 attctggaaacatagtggtcacgcaact 31303569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 20556756 - 20556866
Alignment:
Q  2 attttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaa 101  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || |||||||||||||||||    
T  20556756 attttttcagttgtgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatacgcgtgaccaatatttttccacttagttaaccaaataaa 20556855  T
Q  102 ttctgaaaaaa 112  Q
    |||||||||||    
T  20556856 ttctgaaaaaa 20556866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 4290816 - 4290942
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| ||||||| |||||||||||||||||| |||||||||||||||||||||| || || ||||||||||||||||| || ||||||||||||||||    
T  4290816 cattttttcagttgagtgaccactatttagaagttgaaaaatgtggtcacgcaact-aagtgtgcgtgaccactatttttccacttagttaaccaaataa 4290914  T
Q  101 attctgaaaaaatggtggtcatgcaact 128  Q
    ||||||||||| | ||||||| ||||||    
T  4290915 attctgaaaaactagtggtcacgcaact 4290942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 128
Target Start/End: Original strand, 21589613 - 21589739
Alignment:
Q  2 attttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaa 101  Q
    ||||| ||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| || ||| |||| |||||||     
T  21589613 attttttcagttgtgtgatcactatttagaagctgaaaaatgtggtcatgcaactaaaatgcgtgtgaccactatttttccacttaattaatcaaataag 21589712  T
Q  102 ttctgaaaaaatggtggtcatgcaact 128  Q
    ||||| |||||| ||||||||||||||    
T  21589713 ttctggaaaaatagtggtcatgcaact 21589739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 128
Target Start/End: Original strand, 21548442 - 21548568
Alignment:
Q  2 attttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaa 101  Q
    ||||| ||||||| ||||||| |||||| ||||||||||||||||||||||||||  ||||||||| |||||| ||||| || |||||||||||||||||    
T  21548442 attttttcagttgtgtgaccaatatttaaaagctgaaaaatgtggtcacgcaactcgaatgcgcgtaaccactgtttttccacttagttaaccaaataaa 21548541  T
Q  102 ttctgaaaaaatggtggtcatgcaact 128  Q
    ||||| |||||| ||||||| ||||||    
T  21548542 ttctggaaaaatagtggtcacgcaact 21548568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 18312823 - 18312942
Alignment:
Q  8 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctga 107  Q
    |||||||||| || ||||||||||||||||||| |||| |||||||||||||||||  ||||||||||||||| || |||||||||| ||||||||||      
T  18312823 tcagttgcgtcactactatttagaagctgaaaa-tgtgctcacgcaactaaaatgcatgtgaccactatttttccacttagttaacctaataaattcttg 18312921  T
Q  108 aaaaatggtggtcatgcaact 128  Q
    |||||| ||||||| ||||||    
T  18312922 aaaaatagtggtcacgcaact 18312942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 22740776 - 22740654
Alignment:
Q  3 ttttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaat 102  Q
    |||| ||||||| ||||||| |||||| |||||||||||| ||||||||||||||||||  |||||| || ||||||| || ||||||||||||||||||    
T  22740776 ttttttcagttgtgtgacca-tatttaaaagctgaaaaatatggtcacgcaactaaaatatgcgtgatcattatttttccacttagttaaccaaataaat 22740678  T
Q  103 tctgaaaaaatggtggtcatgcaa 126  Q
    ||||||||||| || |||| ||||    
T  22740677 tctgaaaaaatagtagtcacgcaa 22740654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 28805094 - 28804990
Alignment:
Q  16 gtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaatgg 115  Q
    |||| |||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||| || ||||||||||||||||||| || ||| || |    
T  28805094 gtgatcactatttagaagctgaaaaatgtggtcacacaaccaaaatgcgcg-gaccactatttttccacttagttaaccaaataaattatggaaatatag 28804996  T
Q  116 tggtca 121  Q
    ||||||    
T  28804995 tggtca 28804990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 5083911 - 5083792
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| ||| |||||||||||||||||||||| |||||||| ||||||||||||| ||||||| |||||||||||||||  | || |||||| ||||||    
T  5083911 cattttttcaattgcgtgaccactatttagaagttgaaaaatatggtcacgcaact-aaatgcgggtgaccactatttttcaactttgttaacgaaataa 5083813  T
Q  101 attctgaaaaaatggtggtca 121  Q
    |||||  |||||| |||||||    
T  5083812 attctagaaaaatagtggtca 5083792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 46943839 - 46943761
Alignment:
Q  25 atttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactatt--ttttcatttagttaaccaaataaat 102  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||    
T  46943839 atttagaagctgaaaa-tgtgatcacgcaactaaaatgcgcgtgaccactattttttttcacttagttaaccaaataaat 46943761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 15958416 - 15958313
Alignment:
Q  21 cactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccac----tattttttcatttagttaaccaaataaattctgaaaaaatggt 116  Q
    |||||||||||||||||||||||||||||||||| | ||||| |||||| |||    | |||||| | ||| ||||||||||||||||||||||||| ||    
T  15958416 cactatttagaagctgaaaaatgtggtcacgcaa-ttaaatgtgcgtgatcacaatttttttttttacttatttaaccaaataaattctgaaaaaatagt 15958318  T
Q  117 ggtca 121  Q
    |||||    
T  15958317 ggtca 15958313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 32964775 - 32964852
Alignment:
Q  25 atttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaat 102  Q
    |||||||||||||||||| |||||| | ||||||||||| |||||||||||||||| || ||| |||||| |||||||    
T  32964775 atttagaagctgaaaaatatggtcatgtaactaaaatgcacgtgaccactatttttccacttaattaacctaataaat 32964852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 5174910 - 5174975
Alignment:
Q  56 taaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaatggtggtca 121  Q
    ||||||| ||||||||||||||||| || |||||||| |||||||||||||||||| | |||||||    
T  5174910 taaaatgtgcgtgaccactatttttacacttagttaatcaaataaattctgaaaaattagtggtca 5174975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 27523583 - 27523496
Alignment:
Q  25 atttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaa 112  Q
    |||||||| ||||||||  ||||||  ||| ||||||| || |||| ||||||||| || ||| ||||||||||||||||||||||||    
T  27523583 atttagaaactgaaaaacatggtcatacaattaaaatgtgcttgactactatttttccacttaattaaccaaataaattctgaaaaaa 27523496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 2887230 - 2887188
Alignment:
Q  18 gaccactatttagaagctgaaaaatgtggtcacgcaactaaaa 60  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  2887230 gaccactatttagaagctgaaaaatgtggttacgcaactaaaa 2887188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 28804950 - 28804882
Alignment:
Q  156 ttggttaactgaaatttttcagaatagtacaaatgaatgtacatatcattaagggtgcctacctatcattgc 227  Q
    ||||||||||||||||||  ||||| ||||||| |  |||||||   |||||||||| ||||||||||||||    
T  28804950 ttggttaactgaaattttctagaatggtacaaaagggtgtacat---attaagggtgtctacctatcattgc 28804882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 22033151 - 22033095
Alignment:
Q  25 atttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactatttttt 81  Q
    |||||||| |||||||||  || ||| ||||||||||| ||| ||||||||||||||    
T  22033151 atttagaaactgaaaaatacgggcacacaactaaaatgtgcgggaccactatttttt 22033095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 38606948 - 38606828
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||||||||||||||    
T  38606948 cattttttcagttgcgttaccactatttagaagctgaaaaatgtggtcacgcaacgaaaatgcgtgtgaccactatttttccacttagttaaccaaataa 38606849  T
Q  101 attctgaaaaaatggtggtca 121  Q
    |||||| ||| || |||||||    
T  38606848 attctggaaacatagtggtca 38606828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 5322082 - 5321955
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| ||| |||||||| || ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  5322082 cattttttcaattgcgtgatcattatttagaagctgaaaaatatgatcacgcaactaaaatgcgcgtgaccactatttttccacttagttaaccaaataa 5321983  T
Q  101 attctgaaaaaatggtggtcatgcaact 128  Q
    ||||| ||||||| ||||||| ||||||    
T  5321982 attctaaaaaaatagtggtcacgcaact 5321955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 5573769 - 5573879
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| ||| |||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||| || ||||||||||||||||    
T  5573769 cattttttcaattgcgtgaccactatttagaagttgaaaaatgtggtcatggaactaaaatgcacgtgaccactatttttccacttagttaaccaaataa 5573868  T
Q  101 attctgaaaaa 111  Q
    ||| |||||||    
T  5573869 attttgaaaaa 5573879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 26493456 - 26493347
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| ||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||| |||||||    
T  26493456 cattttttcagttgtgtaactactatttagaagctgaaaaatgtggtcacgcaact-aaatgcgcgtgacaactatttttccatttagttaatcaaataa 26493358  T
Q  101 attctgaaaaa 111  Q
    |||||||||||    
T  26493357 attctgaaaaa 26493347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 29367174 - 29367076
Alignment:
Q  2 attttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    ||||| ||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  29367174 attttttcaattgtgtgaccactattttgaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactatttttccacttagttaaccaaataa 29367076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 31273675 - 31273555
Alignment:
Q  8 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctga 107  Q
    |||||||||||||| |||||||||||||||||||| |||||| ||| ||||||||| ||||| | ||||||||||| | ||||||||||||||||||| |    
T  31273675 tcagttgcgtgacccctatttagaagctgaaaaatatggtcatgcagctaaaatgcacgtgaacgctattttttcactaagttaaccaaataaattctta 31273576  T
Q  108 aaaaatggtggtcatgcaact 128  Q
    |||||||||| ||| ||||||    
T  31273575 aaaaatggtgatcacgcaact 31273555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 1241019 - 1240901
Alignment:
Q  2 attttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaa 101  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||  || |||||||||||||||||    
T  1241019 attttttcagttgtgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgcgtgaccactattttcccacttagttaaccaaataaa 1240921  T
Q  102 ttctgaaaaaatggtggtca 121  Q
    || || |||||| |||||||    
T  1240920 ttatggaaaaatagtggtca 1240901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 15714815 - 15714688
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| |||| || ||||| |||||||| |||||||||||| |||||||| ||||||||||  |||||||||||||||| || ||||||||||||||||    
T  15714815 cattttttcagctgtgtgactactatttaaaagctgaaaaatatggtcacgtaactaaaatgtccgtgaccactatttttccacttagttaaccaaataa 15714716  T
Q  101 attctgaaaaaatggtggtcatgcaact 128  Q
    |||  |||||||| ||||||| ||||||    
T  15714715 atttcgaaaaaatagtggtcacgcaact 15714688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 1251596 - 1251470
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| |||||||||||||||||||||| || |||||||||||| ||| | |||||||||| ||| ||||||||||||  || ||||||||||||||||    
T  1251596 cattttttcagttgcgtgaccactatttaaaacctgaaaaatgtgatcatg-aactaaaatgtgcgcgaccactattttcccacttagttaaccaaataa 1251498  T
Q  101 attctgaaaaaatggtggtcatgcaact 128  Q
    ||| || |||||| ||||||| ||||||    
T  1251497 attatggaaaaatagtggtcacgcaact 1251470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 15233241 - 15233318
Alignment:
Q  25 atttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaat 102  Q
    ||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  15233241 atttaaaagttgaaaaacgtggtcacgcaactaaaatgcgcatgaccactattttttcacttaattaaccaaataaat 15233318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 31596784 - 31596894
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| |||||||||| ||||||||||||||| |||||||||||||||  ||||| ||||||| || | |||||||||| || ||| ||||||||||||    
T  31596784 cattttttcagttgcgttaccactatttagaagatgaaaaatgtggtcagacaact-aaatgcgtgtaatcactatttttccacttaattaaccaaataa 31596882  T
Q  101 attctgaaaaaa 112  Q
    ||| || |||||    
T  31596883 attatggaaaaa 31596894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 33286206 - 33286263
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaa 58  Q
    |||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  33286206 cattttttcaattgcgtgaccactttttagaagctgaaaaatgtggtcacgcaactaa 33286263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 32959549 - 32959635
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcattta 87  Q
    |||||| ||| || ||||||||| ||| ||||||| |||||| ||||||| ||||||||||| | ||||||||||||||| ||||||    
T  32959549 cattttttcaattacgtgaccaccattaagaagctaaaaaatatggtcacacaactaaaatgtgtgtgaccactatttttccattta 32959635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 6809804 - 6809895
Alignment:
Q  21 cactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaa 112  Q
    ||||||||| ||| | ||||||||||| || | |||||||| |  ||||||||||||||| |||||| ||||||||||||||| ||| ||||    
T  6809804 cactatttaaaagataaaaaatgtggttactcgactaaaatacatgtgaccactatttttccatttaattaaccaaataaattatgagaaaa 6809895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 24575962 - 24575907
Alignment:
Q  66 gtgaccactattttttcatttagttaaccaaataaattctgaaaaaatggtggtca 121  Q
    |||||||||||||||||| ||| |||||||||||||||||| |||||| |||||||    
T  24575962 gtgaccactattttttcacttatttaaccaaataaattctggaaaaatagtggtca 24575907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 24538078 - 24537982
Alignment:
Q  24 tatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaatggtggtca 121  Q
    |||||||||||| |||||| |||||| | ||||  || ||| || |||||||||||| ||| | |||||||||||||||| || |||| | |||||||    
T  24538078 tatttagaagct-aaaaatatggtcatgtaactgcaacgcgtgttaccactatttttccatatggttaaccaaataaattttggaaaattagtggtca 24537982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24576018 - 24575974
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtg 45  Q
    |||||| | |||| ||| |||||||||||||||||||||||||||    
T  24576018 cattttttgagtttcgttaccactatttagaagctgaaaaatgtg 24575974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 9809063 - 9809162
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  9809063 cattttttcagttgcgtgaccactatttagaagctgaaaaatgtagtcacgcaactcaaatgcgcgtgaccactatttttccatttagttaaccaaataa 9809162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 1966943 - 1966826
Alignment:
Q  10 agttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||| |||||||||||||||||| ||    
T  1966943 agttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaact-aaatgcgcgtgaccactatttttccacttaattaaccaaataaattctggaa 1966845  T
Q  110 aaatggtggtcatgcaact 128  Q
    || | ||||||| ||||||    
T  1966844 aactagtggtcacgcaact 1966826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 9810749 - 9810860
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||    
T  9810749 cattttttcagttgcgtgaccactatttagaagctaaaaaatgtagtcacgcaactcaaatgtgcgtgacctctatttttccatttagttaaccaaataa 9810848  T
Q  101 attctgaaaaaa 112  Q
     || ||||||||    
T  9810849 tttatgaaaaaa 9810860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 16583585 - 16583712
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| ||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||| || ||| ||||||||||||    
T  16583585 cattttttcagttgcgtgaccactatttagaagctgaaaaatatgatcatgcaactaaaatgcgcgtgaccactatttttccacttaattaaccaaataa 16583684  T
Q  101 attctgaaaaaatggtggtcatgcaact 128  Q
    ||| ||  ||||| || |||| ||||||    
T  16583685 attatggtaaaatagtagtcacgcaact 16583712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 17633461 - 17633337
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagct-gaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaata 99  Q
    |||||| |||||||||||||||| || |||||| | ||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  17633461 cattttttcagttgcgtgaccac-atctagaagtttgaaaaatatggtcacgcaactaaaatgcgcgtgaccactattttttaacttagttaaccaaata 17633363  T
Q  100 aattctgaaaaaatggtggtcatgca 125  Q
    |||| || | |||| |||||||||||    
T  17633362 aattttggacaaattgtggtcatgca 17633337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 33249729 - 33249616
Alignment:
Q  8 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctga 107  Q
    |||||||||||||||||||||||||| |||||||||||||||||||  ||||||||| ||||||||||||||| ||  ||||||| |||||||||| |||    
T  33249729 tcagttgcgtgaccactatttagaaggtgaaaaatgtggtcacgcacataaaatgcgtgtgaccactatttttccacctagttaatcaaataaattttga 33249630  T
Q  108 aaaaatggtggtca 121  Q
    |||| | |||||||    
T  33249629 aaaagtagtggtca 33249616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 19596789 - 19596891
Alignment:
Q  19 accactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaatggtgg 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||   || |||||||||||||||||||||||||| || ||||    
T  19596789 accattatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcatgactactatttacccacttagttaaccaaataaattctgaaaacatagtgg 19596888  T
Q  119 tca 121  Q
    |||    
T  19596889 tca 19596891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 33179872 - 33179759
Alignment:
Q  8 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctga 107  Q
    |||| ||||||||||||||||||||  |||||||||||| ||| ||||||||||||| ||||||||||||||| || |||||||| |||||||||||| |    
T  33179872 tcagctgcgtgaccactatttagaaagtgaaaaatgtggccacacaactaaaatgcgtgtgaccactatttttccacttagttaatcaaataaattctaa 33179773  T
Q  108 aaaaatggtggtca 121  Q
    |||| | |||||||    
T  33179772 aaaagtagtggtca 33179759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 8740908 - 8740809
Alignment:
Q  3 ttttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaat 102  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||  | ||||||||| ||||||||    
T  8740908 ttttttcagttgcgtgatcactatttagaagctgaaaaatgtggtcacg-tactaaaatgcgcgtgaccactatttttctacttagttaactaaataaat 8740810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 2433701 - 2433811
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||| | ||  ||||||| ||||||||||||||||||| || |||||||||||||    
T  2433701 cattttttcagttgtttgaccactatttagaagctgaaaaatgtggtcatgaaaa-aaaatgcacgtgaccactattttttcactttgttaaccaaataa 2433799  T
Q  101 attctgaaaaaa 112  Q
    ||| ||||||||    
T  2433800 attatgaaaaaa 2433811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 42908564 - 42908675
Alignment:
Q  8 tcagttgcgtgaccactatttagaagctgaaaaa-tgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctg 106  Q
    ||||||| |||||||| ||||| ||| ||||||| |||| |||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||    
T  42908564 tcagttgtgtgaccac-atttaaaagttgaaaaaatgtgatcacgcaactaaaatgcgcgtgaccactatgtttcctcttagttaaccaaataaattctg 42908662  T
Q  107 aaaaaatggtggt 119  Q
     |||||| |||||    
T  42908663 gaaaaatagtggt 42908675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 55666938 - 55666844
Alignment:
Q  8 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaatt 103  Q
    ||||||||||||||| |||||| ||||||||||| ||||||||| ||||||||||  |||||||||||||||| || |||||||| ||||||||||    
T  55666938 tcagttgcgtgaccattatttataagctgaaaaacgtggtcacg-aactaaaatgttcgtgaccactatttttccacttagttaagcaaataaatt 55666844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 35544523 - 35544438
Alignment:
Q  17 tgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaatt 103  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||| || ||| ||||| |||||||||    
T  35544523 tgaccactatttagaagctgaaaaatgtggtcacgcaact-aaatgcgtgtgatcactatttttccacttaattaactaaataaatt 35544438  T

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Target: chr4; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 14351069 - 14351178
Alignment:
Q  19 accactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaaaaatggtgg 118  Q
    |||||||||| |||||| ||| ||||| ||||||||||||||||  | |||||||||||||| || ||||||||||||||||||| ||  ||||| ||||    
T  14351069 accactattttgaagctaaaagatgtgatcacgcaactaaaatgtccatgaccactatttttccacttagttaaccaaataaattttgtcaaaatagtgg 14351168  T
Q  119 tcatgcaact 128  Q
    ||| ||||||    
T  14351169 tcacgcaact 14351178  T

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Target: chr4; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 24669197 - 24669274
Alignment:
Q  25 atttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaat 102  Q
    |||||||| || |||||| |||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||    
T  24669197 atttagaaactcaaaaatatggtcacgcaactaaaattcgtgtgaccactattttttcacttagttaaccaaataaat 24669274  T

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Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 20874823 - 20874880
Alignment:
Q  2 attttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaa 59  Q
    ||||| |||||||||||| |||| |||||||||||||||||||||| |||||||||||    
T  20874823 attttttcagttgcgtgatcactttttagaagctgaaaaatgtggtaacgcaactaaa 20874880  T

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Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 1967016 - 1966978
Alignment:
Q  3 ttttatcagttgcgtgaccactatttagaagctgaaaaa 41  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  1967016 ttttttcagttgcgtgaccactatttagaagctgaaaaa 1966978  T

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Target: scaffold1126 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 322 - 202
Alignment:
Q  8 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctga 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||| ||| |||||||| || |||    
T  322 tcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcatgaccactatttttccacttacttatccaaataatttttga 223  T
Q  108 aaaaatggtggtcatgcaact 128  Q
    |||| | ||||||| ||||||    
T  222 aaaattagtggtcacgcaact 202  T

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Target: scaffold0123 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 24140 - 24021
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataa 100  Q
    |||||| |||||||| ||||||||||||||||||| ||||||||||| |||||  ||||||||||||||||||||||||| || ||| || |||||||||    
T  24140 cattttttcagttgcatgaccactatttagaagctaaaaaatgtggttacgcat-taaaatgcgcgtgaccactatttttccacttattttaccaaataa 24042  T
Q  101 attctgaaaaaatggtggtca 121  Q
    ||||||||||| | |||||||    
T  24041 attctgaaaaactagtggtca 24021  T

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Target: scaffold0251 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 10726 - 10623
Alignment:
Q  10 agttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaattctgaaa 109  Q
    |||||| ||||||||||||| ||  | ||||||||||||||||||||||||| | |||||||| ||||||| || ||||||||||||||||||||| |||    
T  10726 agttgcatgaccactatttaaaaaataaaaaatgtggtcacgcaactaaaatacccgtgaccattatttttccacttagttaaccaaataaattctcaaa 10627  T
Q  110 aaat 113  Q
    ||||    
T  10626 aaat 10623  T

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Target: scaffold0043 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 87035 - 87112
Alignment:
Q  25 atttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaat 102  Q
    |||||||| |||||||||||||||||||||||||||| | ||||||||||||||||  | ||||||||||||||||||    
T  87035 atttagaaactgaaaaatgtggtcacgcaactaaaatacacgtgaccactatttttctacttagttaaccaaataaat 87112  T

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Target: scaffold0024 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 112158 - 112235
Alignment:
Q  25 atttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaat 102  Q
    ||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| || ||||||||| ||||||||    
T  112158 atttagaagctgaaaaacgtggtcacgcaattaaaatgcacgtgaccactatttttccacttagttaactaaataaat 112235  T

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Target: scaffold0291 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 5870 - 5947
Alignment:
Q  25 atttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactattttttcatttagttaaccaaataaat 102  Q
    ||||| |||||||||| ||||||  |||||||||||| |||||||||||||||||| || ||| ||||||||||||||    
T  5870 atttaaaagctgaaaagtgtggtgtcgcaactaaaatacgcgtgaccactatttttgcacttaattaaccaaataaat 5947  T

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Target: scaffold0126 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 21600 - 21549
Alignment:
Q  1 cattttatcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgc 52  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  21600 cattttttcagttgcgtgaccactatatagaagctgaaaaatgtggtcacgc 21549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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