View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5247_low_19 (Length: 251)
Name: NF5247_low_19
Description: NF5247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5247_low_19 |
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| [»] scaffold0155 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 42394453 - 42394233
Alignment:
| Q |
18 |
ggtggctcagatatatcatggagcccgtacggaccacagtggcggatgctgaggaaagtttgtgtggtgaagatgcttagcaataaaagtcttgattcag |
117 |
Q |
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| T |
42394453 |
ggtggctcagatatatcatggagcccgtacggaccacagtggcggatgctgaggaaagtttgtgtggtgaagatgcttagcaataaaagtcttgattcag |
42394354 |
T |
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| Q |
118 |
tctacgaactccgccgtggtgaggttcggaaaatggtagagtatattcacaactgtgccggatcaacggtgaatgttggggagcaagtgtttttgacggt |
217 |
Q |
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| T |
42394353 |
tctacgaactccgccgtggtgaggttcggaaaatggtagagtatattcacaactgtgccggatcaacggtgagtgttggggagcaagtgtttttgacggt |
42394254 |
T |
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| Q |
218 |
gttaaacgtgattactaatat |
238 |
Q |
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||| ||||||||||||||||| |
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| T |
42394253 |
gttgaacgtgattactaatat |
42394233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 238
Target Start/End: Complemental strand, 42378521 - 42378318
Alignment:
| Q |
35 |
atggagcccgtacggaccacagtggcggatgctgaggaaagtttgtgtggtgaagatgcttagcaataaaagtcttgattcagtctacgaactccgccgt |
134 |
Q |
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| T |
42378521 |
atggaccccctacggtccacagtggcgtatgctgagaaaaatctgtgtcgtgaagatgcttagtaacacaactcttgactccgtttacgagctccgacga |
42378422 |
T |
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| Q |
135 |
ggtgaggttcggaaaatggtagagtatattcacaactgtgccggatcaacggtgaatgttggggagcaagtgtttttgacggtgttaaacgtgattacta |
234 |
Q |
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| T |
42378421 |
ggtgaggttcggaaaacggtcgggtatattcatgatcgggtagggtcaacggtgaatgttggtgagcaggtttttttaacggtgttgaatgtgattacga |
42378322 |
T |
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| Q |
235 |
atat |
238 |
Q |
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|||| |
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| T |
42378321 |
atat |
42378318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 343 - 224
Alignment:
| Q |
18 |
ggtggctcagatatatcatggagcccgtacggaccacagtggcggatgctgaggaaagtttgtgtggtgaagatgcttagcaataaaagtcttgattcag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
343 |
ggtggctcagatatatcatggagcccgtacggaccacagtggtggatgctgaggaaagtttgtgtggtgaagatgcttagcaataaaagtcttgattcag |
244 |
T |
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| Q |
118 |
tctacgaactccgccgtggt |
137 |
Q |
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| T |
243 |
tgtatgaactccgccgtggt |
224 |
T |
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