View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5247_low_2 (Length: 760)

Name: NF5247_low_2
Description: NF5247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5247_low_2
NF5247_low_2
[»] chr3 (18 HSPs)
chr3 (19-382)||(11427105-11427468)
chr3 (114-240)||(11430984-11431110)
chr3 (607-702)||(31688156-31688252)
chr3 (607-706)||(31896611-31896711)
chr3 (607-706)||(31912320-31912420)
chr3 (607-706)||(31945968-31946068)
chr3 (390-469)||(19766009-19766088)
chr3 (384-439)||(11394007-11394062)
chr3 (406-491)||(31687881-31687966)
chr3 (540-580)||(31688056-31688096)
chr3 (395-439)||(46233973-46234017)
chr3 (720-760)||(52130955-52130995)
chr3 (540-580)||(31896771-31896811)
chr3 (540-580)||(31912480-31912520)
chr3 (639-678)||(952782-952821)
chr3 (389-452)||(52130783-52130846)
chr3 (20-73)||(11431151-11431204)
chr3 (578-611)||(52131084-52131117)
[»] chr1 (13 HSPs)
chr1 (537-760)||(7607930-7608155)
chr1 (537-760)||(31770918-31771143)
chr1 (395-513)||(31771310-31771428)
chr1 (395-517)||(7608318-7608440)
chr1 (449-542)||(7608224-7608317)
chr1 (449-542)||(31771212-31771305)
chr1 (395-452)||(1721556-1721613)
chr1 (385-452)||(17726023-17726089)
chr1 (394-439)||(32440659-32440704)
chr1 (394-452)||(22368196-22368254)
chr1 (241-290)||(5878780-5878828)
chr1 (697-734)||(14184848-14184885)
chr1 (241-290)||(5874891-5874939)
[»] scaffold0003 (5 HSPs)
scaffold0003 (578-706)||(36664-36794)
scaffold0003 (578-697)||(42852-42976)
scaffold0003 (395-491)||(36966-37062)
scaffold0003 (390-430)||(43199-43239)
scaffold0003 (540-579)||(36837-36876)
[»] chr6 (4 HSPs)
chr6 (578-697)||(27444385-27444509)
chr6 (384-429)||(31444760-31444805)
chr6 (390-430)||(27444122-27444162)
chr6 (389-437)||(33054175-33054223)
[»] chr4 (6 HSPs)
chr4 (697-760)||(41810334-41810397)
chr4 (385-452)||(32651267-32651334)
chr4 (385-469)||(38467690-38467775)
chr4 (397-469)||(3649873-3649945)
chr4 (387-450)||(41810163-41810226)
chr4 (395-430)||(26720237-26720272)
[»] scaffold0152 (1 HSPs)
scaffold0152 (395-491)||(10195-10291)
[»] chr2 (5 HSPs)
chr2 (381-452)||(997806-997877)
chr2 (394-469)||(4453777-4453852)
chr2 (394-439)||(9208569-9208614)
chr2 (390-429)||(7161811-7161850)
chr2 (385-448)||(3625169-3625234)
[»] scaffold0014 (1 HSPs)
scaffold0014 (388-430)||(32608-32650)
[»] chr8 (2 HSPs)
chr8 (395-469)||(44663663-44663737)
chr8 (395-469)||(35348991-35349066)
[»] chr7 (3 HSPs)
chr7 (390-439)||(16262692-16262741)
chr7 (395-437)||(21820186-21820228)
chr7 (241-274)||(20431259-20431292)


Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 11427468 - 11427105
Alignment:
Q  19 gtttaattacaggtatgtataccattccactaagcgttgcttctcctatttttcaaataattttgtaggaannnnnnnnnnnnnnnnnaatcttctgctt 118  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||    
T  11427468 gtttaattacaggtatgtatacgattccactaagcgttgcttctcctatttttcaaataattttgtaggaattttttaatttttttttaatcttctgctt 11427369  T
Q  119 ttgttggagctgcagtgaaacctttctcatgctttggttgtggatgatcttttctctgtcctttctttcctcgttggcgactgatgcttccaatgtaatt 218  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||    
T  11427368 ttgttggagctgtagtgaaacctttctcatgctttggttgtggatgatcttttctctgtcctttctttcctcgttggcgaccgatgcttcgagtgtaatt 11427269  T
Q  219 tctttgattaacgtgttttctttgacaattaataatataaggtatgattcaatatttatctttgtgtgatgaccactaatttaatttgaagctgatttta 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11427268 tctttgattaacgtgttttctttgacaattaataatataaggtatgattcaatatttatctttgtgtgatgaccactaatttaatttgaaggtgatttta 11427169  T
Q  319 gggagcatacatcattttcatagtatcaagatgcaaaactaattacattttgcaatcaggtaat 382  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  11427168 gggagcatacatcattttcatggtatcaagatgcaaaactaattatattttgcaatcaggtaat 11427105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 114 - 240
Target Start/End: Complemental strand, 11431110 - 11430984
Alignment:
Q  114 tgcttttgttggagctgcagtgaaacctttctcatgctttggttgtggatgatcttttctctgtcctttctttcctcgttggcgactgatgcttccaatg 213  Q
    ||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||| | ||||||||  |||||||| | ||    
T  11431110 tgcttttgttggaactgcagtaaaacctttctcatgcttttgttgtggatgatcttttctctgtcctttgtttcgtggttggcgatcgatgcttcgagtg 11431011  T
Q  214 taatttctttgattaacgtgttttctt 240  Q
    |||||| ||||||||||||||||||||    
T  11431010 taatttatttgattaacgtgttttctt 11430984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 607 - 702
Target Start/End: Original strand, 31688156 - 31688252
Alignment:
Q  607 attcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtc 702  Q
    ||||||||| |||||||||||||||  |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31688156 attcctcatcttcttcaaaaacacacaaaatccctt-ttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtc 31688252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 607 - 706
Target Start/End: Complemental strand, 31896711 - 31896611
Alignment:
Q  607 attcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 704  Q
    ||||||||| |||||||||||||||  |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31896711 attcctcatcttcttcaaaaacacacaaaatccctt-ttcttcttttgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 31896613  T
Q  705 aa 706  Q
    ||    
T  31896612 aa 31896611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 607 - 706
Target Start/End: Complemental strand, 31912420 - 31912320
Alignment:
Q  607 attcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 704  Q
    ||||||||| |||||||||||||||  |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31912420 attcctcatcttcttcaaaaacacacaaaatccctt-ttcttcttttgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 31912322  T
Q  705 aa 706  Q
    ||    
T  31912321 aa 31912320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 607 - 706
Target Start/End: Complemental strand, 31946068 - 31945968
Alignment:
Q  607 attcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 704  Q
    ||||||||| |||||||||||||||  |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31946068 attcctcatcttcttcaaaaacacacaaaatccctt-ttcttcttttgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 31945970  T
Q  705 aa 706  Q
    ||    
T  31945969 aa 31945968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 390 - 469
Target Start/End: Original strand, 19766009 - 19766088
Alignment:
Q  390 atctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 469  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| || || ||||||| |||||    
T  19766009 atctaatctaacttatttctaatcctagttaacactccaattaacactccaaaccctaatcctacttttttaggcgccaa 19766088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 384 - 439
Target Start/End: Original strand, 11394007 - 11394062
Alignment:
Q  384 tatctaatctaatctaacttattcctaatcctagttaacactccaaataacactcc 439  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| || ||||||    
T  11394007 tatctaatctaatctaacttatttctaatcctagttaacactccaattatcactcc 11394062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 406 - 491
Target Start/End: Original strand, 31687881 - 31687966
Alignment:
Q  406 tcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgcc-aacaaacctcagcccttggatcta 491  Q
    ||||| |||||||||||||||||| | ||||||| |||||||||||| || ||||||| ||| ||||| ||| ||||||||||||||    
T  31687881 tcctagtcctagttaacactccaacttacactccaaaccctaattctacttttttaggcgccaaacaatcct-agcccttggatcta 31687966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 540 - 580
Target Start/End: Original strand, 31688056 - 31688096
Alignment:
Q  540 attgtaaatgacaaataattaatgttattggtttccaataa 580  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  31688056 attgtaaatgacaaataattaatgttatcggtttccaataa 31688096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 395 - 439
Target Start/End: Complemental strand, 46234017 - 46233973
Alignment:
Q  395 atctaacttattcctaatcctagttaacactccaaataacactcc 439  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  46234017 atctaacttattcctaatcctagttaacactccaattatcactcc 46233973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 720 - 760
Target Start/End: Original strand, 52130955 - 52130995
Alignment:
Q  720 atcacacctctccattattgttcaatacccatgcaaactct 760  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  52130955 atcacacctctccattattgttcaataccgatgcaaactct 52130995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 540 - 580
Target Start/End: Complemental strand, 31896811 - 31896771
Alignment:
Q  540 attgtaaatgacaaataattaatgttattggtttccaataa 580  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  31896811 attgtaaatgacaaataattaatgttatcgatttccaataa 31896771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 540 - 580
Target Start/End: Complemental strand, 31912520 - 31912480
Alignment:
Q  540 attgtaaatgacaaataattaatgttattggtttccaataa 580  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  31912520 attgtaaatgacaaataattaatgttatcgatttccaataa 31912480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 678
Target Start/End: Complemental strand, 952821 - 952782
Alignment:
Q  639 ttcttcttcttctgccttcatttcgaccctctaaagtaaa 678  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  952821 ttcttcttcttctgccttcatttcaatcctctaaagtaaa 952782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 452
Target Start/End: Original strand, 52130783 - 52130846
Alignment:
Q  389 aatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 452  Q
    |||||| ||||||||||| |||||||||| ||||||||||| || ||||   ||||||||||||    
T  52130783 aatctagtctaacttatttctaatcctaggtaacactccaattaccacttaaaaccctaattct 52130846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 11431204 - 11431151
Alignment:
Q  20 tttaattacaggtatgtataccattccactaagcgttgcttctcctatttttca 73  Q
    ||||| |||||||||| |||  ||||||||| ||| ||||||||||||||||||    
T  11431204 tttaactacaggtatgcatatgattccactatgcgctgcttctcctatttttca 11431151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 611
Target Start/End: Original strand, 52131084 - 52131117
Alignment:
Q  578 taaccctcctttctctccatctctctacgattcc 611  Q
    |||||||||| |||||||||||||||||||||||    
T  52131084 taaccctcctctctctccatctctctacgattcc 52131117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 537 - 760
Target Start/End: Complemental strand, 7608155 - 7607930
Alignment:
Q  537 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctctccatctctctacgattcctcattttcttcaaaaacaca--aaa 634  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||    
T  7608155 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctctccatctctctacgattcctcatcttcttcaaaaacacacaaaa 7608056  T
Q  635 tcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcggaaaactgatgttattatcacacctctccat 734  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  7608055 tcctttcttcttcttttgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgtgtcggaaaactgctgttattatcacacctctccat 7607956  T
Q  735 tattgttcaatacccatgcaaactct 760  Q
    ||||||||||||||||||||||||||    
T  7607955 tattgttcaatacccatgcaaactct 7607930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 537 - 760
Target Start/End: Complemental strand, 31771143 - 31770918
Alignment:
Q  537 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctctccatctctctacgattcctcattttcttcaaaaacaca--aaa 634  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||  |||    
T  31771143 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctcttcatctctctacgattcctcatcttcttcaaaaacacacaaaa 31771044  T
Q  635 tcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcggaaaactgatgttattatcacacctctccat 734  Q
    || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31771043 tcatttcttcttcttctgccttcatttcgaccttctaaagtaaatgcatcatcgttgaccaccgcgttggaaaactgatgttattatcacacctctccat 31770944  T
Q  735 tattgttcaatacccatgcaaactct 760  Q
    ||||||||||||||||||||||||||    
T  31770943 tattgttcaatacccatgcaaactct 31770918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 395 - 513
Target Start/End: Complemental strand, 31771428 - 31771310
Alignment:
Q  395 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaacaaacctcagcccttggatctaatc 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  31771428 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctgttttaggcgccaacaaacctcagcccttggatctaatc 31771329  T
Q  495 tgtttgccattttttcctc 513  Q
    ||||||| |||||||||||    
T  31771328 tgtttgcaattttttcctc 31771310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 395 - 517
Target Start/End: Complemental strand, 7608440 - 7608318
Alignment:
Q  395 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaacaaacctcagcccttggatctaatc 494  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||    
T  7608440 atctaacttattcctaatcctagttaaaactccaaataacactcccaaccctaattctcctgttttaggcgccaacaaatctcagcccttggatctaatc 7608341  T
Q  495 tgtttgccattttttcctccttt 517  Q
    ||||||| |||||||||||||||    
T  7608340 tgtttgcaattttttcctccttt 7608318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 449 - 542
Target Start/End: Complemental strand, 7608317 - 7608224
Alignment:
Q  449 ttctcctattttaggtgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 542  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7608317 ttctcctgttttaggcgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 7608224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 449 - 542
Target Start/End: Complemental strand, 31771305 - 31771212
Alignment:
Q  449 ttctcctattttaggtgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 542  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31771305 ttctcctgttttaggcgccaacaaacctcagcccttggatctaatctgtttgccagtttttcctcctttcttacgtgacaaaattaattgtatt 31771212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 395 - 452
Target Start/End: Original strand, 1721556 - 1721613
Alignment:
Q  395 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 452  Q
    |||||||||||||||||||||| |||||||||||| |||| || ||||||||||||||    
T  1721556 atctaacttattcctaatcctaattaacactccaattaacgctgccaaccctaattct 1721613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 385 - 452
Target Start/End: Original strand, 17726023 - 17726089
Alignment:
Q  385 atctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 452  Q
    |||||||||||||||| |||||||||||||||||||||||||||| || ||||   ||||||||||||    
T  17726023 atctaatctaatctaa-ttattcctaatcctagttaacactccaattatcacttaaaaccctaattct 17726089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 394 - 439
Target Start/End: Complemental strand, 32440704 - 32440659
Alignment:
Q  394 aatctaacttattcctaatcctagttaacactccaaataacactcc 439  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  32440704 aatctaacttattcctaatcctagttaacactccaattatcactcc 32440659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 394 - 452
Target Start/End: Complemental strand, 22368254 - 22368196
Alignment:
Q  394 aatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 452  Q
    |||||||||||||||||||||||||||||||| ||| || ||||   ||||||||||||    
T  22368254 aatctaacttattcctaatcctagttaacacttcaattatcacttaaaaccctaattct 22368196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 5878828 - 5878780
Alignment:
Q  241 tgacaattaataatataaggtatgattcaatatttatctttgtgtgatga 290  Q
    |||||||| | |||||||||||||||||||||||||| ||||||||||||    
T  5878828 tgacaattgaaaatataaggtatgattcaatatttat-tttgtgtgatga 5878780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 697 - 734
Target Start/End: Original strand, 14184848 - 14184885
Alignment:
Q  697 cgcgtcggaaaactgatgttattatcacacctctccat 734  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  14184848 cgcgtaggaaaactgatgttattatcacacctctccat 14184885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 5874939 - 5874891
Alignment:
Q  241 tgacaattaataatataaggtatgattcaatatttatctttgtgtgatga 290  Q
    |||||||| | ||||||||||||||||||||||||||  |||||||||||    
T  5874939 tgacaattgacaatataaggtatgattcaatatttat-gttgtgtgatga 5874891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 100; Significance: 5e-49; HSPs: 5)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 578 - 706
Target Start/End: Complemental strand, 36794 - 36664
Alignment:
Q  578 taaccctcctttctctccatctctctacgattcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagt 675  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||| || ||||||||||||||||||||||||||||||||||    
T  36794 taaccctcctttctctccatctctctacgattcctcatcttcttcaaaaacacacaaaatccctttttcttcttctgccttcatttcgaccctctaaagt 36695  T
Q  676 aaatgcatcatcgttgaccaccgcgtcggaa 706  Q
    ||||||||||||||||| |||||||| ||||    
T  36694 aaatgcatcatcgttgatcaccgcgttggaa 36664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 578 - 697
Target Start/End: Complemental strand, 42976 - 42852
Alignment:
Q  578 taaccctcctttctctccatctctctacgattcctcattttcttcaaaaacaca--aaatcctttcttcttcttct---gccttcatttcgaccctctaa 672  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||  |||||| |||||||||||||   |||||||||||||||||||||    
T  42976 taaccctcctttctctccatctctctacgattcctcgtcttcttcaaaaacacacaaaatcccttcttcttcttcttctgccttcatttcgaccctctaa 42877  T
Q  673 agtaaatgcatcatcgttgaccacc 697  Q
    |||||||||||||||||||||||||    
T  42876 agtaaatgcatcatcgttgaccacc 42852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 395 - 491
Target Start/End: Complemental strand, 37062 - 36966
Alignment:
Q  395 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgcc-aacaaacctcagcccttggatcta 491  Q
    |||||||||||||||||||||| |||||||||||| ||||||| | || ||||||||| || ||||||| ||| ||||| ||| ||||||||||||||    
T  37062 atctaacttattcctaatcctaattaacactccaattaacacttcaaatcctaattcttcttttttaggcgccaaacaatcct-agcccttggatcta 36966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 390 - 430
Target Start/End: Complemental strand, 43239 - 43199
Alignment:
Q  390 atctaatctaacttattcctaatcctagttaacactccaaa 430  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  43239 atctaatctaacttattcctaatcgtagttaacactccaaa 43199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 540 - 579
Target Start/End: Complemental strand, 36876 - 36837
Alignment:
Q  540 attgtaaatgacaaataattaatgttattggtttccaata 579  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  36876 attgtaaatgacaaataattaatgttatcggtttccaata 36837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 7e-42; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 578 - 697
Target Start/End: Original strand, 27444385 - 27444509
Alignment:
Q  578 taaccctcctttctctccatctctctacgattcctcattttcttcaaaaacaca--aaatcctttct---tcttcttctgccttcatttcgaccctctaa 672  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||  |||||| ||||   ||||||||||||||||||||||||||||||    
T  27444385 taaccctcctttctctccatctctctacgattcctcgtcttcttcaaaaacacacaaaatcccttcttcttcttcttctgccttcatttcgaccctctaa 27444484  T
Q  673 agtaaatgcatcatcgttgaccacc 697  Q
    |||||||||||||||||||||||||    
T  27444485 agtaaatgcatcatcgttgaccacc 27444509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 31444760 - 31444805
Alignment:
Q  384 tatctaatctaatctaacttattcctaatcctagttaacactccaa 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31444760 tatctaatctaatctaacttattcctaatcctagttaacactccaa 31444805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 390 - 430
Target Start/End: Original strand, 27444122 - 27444162
Alignment:
Q  390 atctaatctaacttattcctaatcctagttaacactccaaa 430  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  27444122 atctaatctaacttattcctaatcgtagttaacactccaaa 27444162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 389 - 437
Target Start/End: Complemental strand, 33054223 - 33054175
Alignment:
Q  389 aatctaatctaacttattcctaatcctagttaacactccaaataacact 437  Q
    |||||||||||||||||||||||||||| |||||||| ||| |||||||    
T  33054223 aatctaatctaacttattcctaatcctaattaacactacaattaacact 33054175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 697 - 760
Target Start/End: Original strand, 41810334 - 41810397
Alignment:
Q  697 cgcgtcggaaaactgatgttattatcacacctctccattattgttcaatacccatgcaaactct 760  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41810334 cgcgtcggaaaactgatgttattatcacacctctccattattgttcaatacccatgcaaactct 41810397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 385 - 452
Target Start/End: Complemental strand, 32651334 - 32651267
Alignment:
Q  385 atctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||    
T  32651334 atctaatctaatctaacttattcctaatcctagttaacactccaattatcacttaaaaccctaattct 32651267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 385 - 469
Target Start/End: Complemental strand, 38467775 - 38467690
Alignment:
Q  385 atctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct-cctattttaggtgccaa 469  Q
    ||||||||||||||||||||||  ||||||||||||||||||||| |||||||   |||||||||||| | ||||||||| |||||    
T  38467775 atctaatctaatctaacttatttataatcctagttaacactccaattaacacttaaaaccctaattctacttattttaggcgccaa 38467690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 397 - 469
Target Start/End: Original strand, 3649873 - 3649945
Alignment:
Q  397 ctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 469  Q
    ||||||||||||||||||||||||||||||||| |||||||   |||||||| ||| || ||||||| |||||    
T  3649873 ctaacttattcctaatcctagttaacactccaattaacacttaaaaccctaaatctacttttttaggcgccaa 3649945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 387 - 450
Target Start/End: Original strand, 41810163 - 41810226
Alignment:
Q  387 ctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaatt 450  Q
    |||||||||||||||||||| |||||||||||||||||||||| || ||||   ||||||||||    
T  41810163 ctaatctaatctaacttatttctaatcctagttaacactccaattaccacttaaaaccctaatt 41810226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 395 - 430
Target Start/End: Original strand, 26720237 - 26720272
Alignment:
Q  395 atctaacttattcctaatcctagttaacactccaaa 430  Q
    ||||||||||||||||||||||||||||||||||||    
T  26720237 atctaacttattcctaatcctagttaacactccaaa 26720272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 395 - 491
Target Start/End: Original strand, 10195 - 10291
Alignment:
Q  395 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgcc-aacaaacctcagcccttggatcta 491  Q
    |||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||| || ||||||| ||| ||||| ||| ||||||||||||||    
T  10195 atctaacttattcccaatcctagttaacactccaattaacactccaaaccctaattctacttttttaggcgccaaacaatcct-agcccttggatcta 10291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 381 - 452
Target Start/End: Original strand, 997806 - 997877
Alignment:
Q  381 atctatctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| || | || ||||||||||||||    
T  997806 atctatctaatctaatctaacttattcctaatcctagttaacacttcaattagccctgccaaccctaattct 997877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 394 - 469
Target Start/End: Original strand, 4453777 - 4453852
Alignment:
Q  394 aatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 469  Q
    |||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||   |||||||| |||||    
T  4453777 aatctaacttattcctaatcctagttaacactccaattaccacttaaaaccctaattctatgattttaggcgccaa 4453852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 394 - 439
Target Start/End: Original strand, 9208569 - 9208614
Alignment:
Q  394 aatctaacttattcctaatcctagttaacactccaaataacactcc 439  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  9208569 aatctaacttattcctaatcctagttaacactccaattatcactcc 9208614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 390 - 429
Target Start/End: Original strand, 7161811 - 7161850
Alignment:
Q  390 atctaatctaacttattcctaatcctagttaacactccaa 429  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  7161811 atctaatctaacttatttctaatcctagttaacactccaa 7161850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 385 - 448
Target Start/End: Original strand, 3625169 - 3625234
Alignment:
Q  385 atctaatctaa--tctaacttattcctaatcctagttaacactccaaataacactcccaaccctaa 448  Q
    |||||||||||  ||||||||||||||||||||| |||||||||||| ||||  | ||||||||||    
T  3625169 atctaatctaacttctaacttattcctaatcctaattaacactccaattaaccatgccaaccctaa 3625234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 388 - 430
Target Start/End: Original strand, 32608 - 32650
Alignment:
Q  388 taatctaatctaacttattcctaatcctagttaacactccaaa 430  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  32608 taatctaatctaacttatttctaatcctagttaacactccaaa 32650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 395 - 469
Target Start/End: Complemental strand, 44663737 - 44663663
Alignment:
Q  395 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 469  Q
    ||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||   |||||||| |||||    
T  44663737 atctaacttattcctaatcctagttaacactccaattaccacttaaaaccctaattctatgattttaggcgccaa 44663663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 395 - 469
Target Start/End: Original strand, 35348991 - 35349066
Alignment:
Q  395 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct-cctattttaggtgccaa 469  Q
    |||||||||||| |||||||||||||||||||||| |||||||   || ||||||||| | ||||||||| |||||    
T  35348991 atctaacttatttctaatcctagttaacactccaattaacacttaaaatcctaattctacttattttaggcgccaa 35349066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 390 - 439
Target Start/End: Complemental strand, 16262741 - 16262692
Alignment:
Q  390 atctaatctaacttattcctaatcctagttaacactccaaataacactcc 439  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||    
T  16262741 atctaatctaacttattcctaatcctagttaacacttcaattatcactcc 16262692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 437
Target Start/End: Complemental strand, 21820228 - 21820186
Alignment:
Q  395 atctaacttattcctaatcctagttaacactccaaataacact 437  Q
    |||||||||||||||||||||| |||||||||||| |||||||    
T  21820228 atctaacttattcctaatcctaattaacactccaattaacact 21820186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 20431292 - 20431259
Alignment:
Q  241 tgacaattaataatataaggtatgattcaatatt 274  Q
    |||||||||| |||||||||||||||||||||||    
T  20431292 tgacaattaacaatataaggtatgattcaatatt 20431259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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