View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5247_low_21 (Length: 251)
Name: NF5247_low_21
Description: NF5247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5247_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 43257815 - 43257576
Alignment:
| Q |
1 |
ccagtatttgcggcactctccacctcatttttctgcatcttgtttcccttctcttcaactccaagttgtacttctttttctttgtcattacttttaaact |
100 |
Q |
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| T |
43257815 |
ccagtatttgcagcactctccacctcatttttctgcatcttgtttcccttctcttcaactccaagttgtacttctttttctttgtcattacttttaaact |
43257716 |
T |
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| Q |
101 |
catttgttacttctccaacagaatctacctttcctgagtcaggaaaagctctttcatcgggatgtgatagcatccctttccgtccaaagaatttatctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43257715 |
catttgttacttctccaacagaatctacctttcctgagtcaggaaaagctctttcatcgggatgtgatagcatccctttccgtccaaagaatttatctcc |
43257616 |
T |
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| Q |
201 |
acatccagcaacaagcttgatttgaaggccatatttctct |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
43257615 |
acatccagcaacaagcttgatttgaaggccatatttctct |
43257576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 64 - 202
Target Start/End: Complemental strand, 43255610 - 43255472
Alignment:
| Q |
64 |
agttgtacttctttttctttgtcattacttttaaactcatttgttacttctccaacagaatctacctttcctgagtcaggaaaagctctttcatcgggat |
163 |
Q |
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||||||||||||||||| ||||||| ||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
43255610 |
agttgtacttctttttcgttgtcatcactcttaaactcatctgctacttctccaacagaatctacctttcctgagtcaggaaaagctctttcatctgatt |
43255511 |
T |
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| Q |
164 |
gtgatagcatccctttccgtccaaagaatttatctccac |
202 |
Q |
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| T |
43255510 |
gcgacattatccctttccgtccaaaaaatttagctccac |
43255472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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