View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5247_low_25 (Length: 243)
Name: NF5247_low_25
Description: NF5247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5247_low_25 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 52583616 - 52583389
Alignment:
| Q |
16 |
catttccaggagaaatgaaaacacgttagccacatttgttccctaaaaaatgaaataataggtgttagctttacaattgtgtttgttggattgaatgaaa |
115 |
Q |
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| T |
52583616 |
catttccaggagaaatgaaaacacgttagccacatttgttccctaaaaaatgaaataataggtgttagctttacaattgtgtttgttggattgaatgaaa |
52583517 |
T |
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| Q |
116 |
ttagaatgagnnnnnnnnggcacggacctgtgttgaattggaggatttggatggcttgcacggataatccaagcgccccgccggaaagttgatactgcgt |
215 |
Q |
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| T |
52583516 |
ttagaatgagaaaaaaaaggcacggacctgtgttgaatcggacgatttggatggcttgcacggataatccaagcgccccgccggaaagttgatactgcgt |
52583417 |
T |
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| Q |
216 |
gtatgagattttgattgtgaagttgaat |
243 |
Q |
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| T |
52583416 |
gtatgagattttgattgtgaagttgaat |
52583389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 37254172 - 37254228
Alignment:
| Q |
69 |
aataataggtgttagctttacaattgtgtttgttggattgaatgaaattagaatgag |
125 |
Q |
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| T |
37254172 |
aataataggtgttagctttgcaattgtgtttgttggatagaatgaaattagaatgag |
37254228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 37253868 - 37253926
Alignment:
| Q |
16 |
catttccaggagaaatgaaaacacgttagccacatttgttccctaaaaaatgaaataat |
74 |
Q |
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|||||||| || |||| ||||||||||||||||||||||||| | ||||||||||||| |
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| T |
37253868 |
catttccaagataaattaaaacacgttagccacatttgttccattgaaaatgaaataat |
37253926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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