View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5247_low_30 (Length: 218)
Name: NF5247_low_30
Description: NF5247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5247_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 14332590 - 14332404
Alignment:
| Q |
12 |
gaagaatatcaagagattggtttttgtcacaatgatctacaatatggtaacatcatgatggatgaagaaacaagatcaatcactttaattgtaagttatc |
111 |
Q |
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| T |
14332590 |
gaagaatatcaagagattggtttttgtcacaatgatctacaatatggtaacatcatgatggatgaagaaacaagatcaatcactttaattgtaagttatc |
14332491 |
T |
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| Q |
112 |
aagattaatcactctaaattgtgcttatataatatgtttataccgtttaacttttatactccatagtcaaaattaatcttgtaggtg |
198 |
Q |
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| T |
14332490 |
aagattaatcactctaaattgtgcttatataatatgtttataccgtttaacttttataatccatagtcaaaattaatcttgtaggtg |
14332404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 14425600 - 14425414
Alignment:
| Q |
12 |
gaagaatatcaagagattggtttttgtcacaatgatctacaatatggtaacatcatgatggatgaagaaacaagatcaatcactttaattgtaagttatc |
111 |
Q |
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| T |
14425600 |
gaagaatatcaagagattggtttttgtcacaatgatctacaatatggtaacatcatgatggatgaagaaacaagatcaatcactttaattgtaagttatc |
14425501 |
T |
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| Q |
112 |
aagattaatcactctaaattgtgcttatataatatgtttataccgtttaacttttatactccatagtcaaaattaatcttgtaggtg |
198 |
Q |
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| T |
14425500 |
aagattaatcactctaaattgtgcttatataatatgtttataccgtttaacttttataatccatagtcaaaattaatcttgtaggtg |
14425414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 44103482 - 44103388
Alignment:
| Q |
12 |
gaagaatatcaagagattggtttttgtcacaatgatctacaatatggtaacatcatgatggatgaagaaacaagatcaatcactttaattgtaag |
106 |
Q |
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| T |
44103482 |
gaaggatatcaagagattggtttttgccacaatgacctacaatatggcaacattatgatggatgaagagactagatcaatcaccctaattgtaag |
44103388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 15546070 - 15546019
Alignment:
| Q |
33 |
ttttgtcacaatgatctacaatatggtaacatcatgatggatgaagaaacaa |
84 |
Q |
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| T |
15546070 |
ttttgccacaatgatttacaatatggtaacatcatgcttgatgaagtaacaa |
15546019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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