View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5247_low_31 (Length: 214)
Name: NF5247_low_31
Description: NF5247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5247_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 30224962 - 30224784
Alignment:
| Q |
20 |
gaacgcctttatcttcaccaaagcccgcctgtaaggaccgaaacataacaaaattcaaggccccaaaacaataaaaagtaaaagacaacgcaaactacta |
119 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
30224962 |
gaacgcctttatcttcaccaaaacccgccggtaaggaccgaaacataacaaaattcaaggccccacaacaataaaaagtaaaagacaatgcaaactacta |
30224863 |
T |
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| Q |
120 |
agagaaaaataattaacatgctaccaaaattaaatcca-cacacaccacaccctatccaactgaaatatgtgatcattc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30224862 |
agagaaaaataattaacatgctaccaaaattaaatccaccacacaccacaccctatccaactgaaatatgtgatcattc |
30224784 |
T |
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