View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5247_low_4 (Length: 566)
Name: NF5247_low_4
Description: NF5247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5247_low_4 |
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| [»] scaffold0308 (1 HSPs) |
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| [»] scaffold0369 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 6e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 355 - 550
Target Start/End: Complemental strand, 43572342 - 43572146
Alignment:
| Q |
355 |
gctacctgaccctgtggggg-ttatactgttcgaggagcttatgttctattaacagtgggtgcacatcctcttttggccgaagcaatggagctagtttgg |
453 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
43572342 |
gctacctgaccctgtggggggttatactgttcgaggagcttatgttctattaacagagggtgctcatcctcttttggccgaagcaatggagctagtatgg |
43572243 |
T |
|
| Q |
454 |
catcatcaagtccccttaaaggtctcgatttttgcttggagacttctccgggatcggttacctacaaaagcaaatttggcagctcgtggtgttctca |
550 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43572242 |
catcgtcaggtccccttaaaggtctcgatttttgcttggagacttctccgggatcggttaccttcaaaagcaaatttggcagctcgtggtgttctca |
43572146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 357 - 461
Target Start/End: Complemental strand, 17855923 - 17855818
Alignment:
| Q |
357 |
tacctgaccctgtggggg-ttatactgttcgaggagcttatgttctattaacagtgggtgcacatcctcttttggccgaagcaatggagctagtttggca |
455 |
Q |
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||||||| |||||||||| |||| |||| ||||||||||||| ||||||||||| |||||| |||||||| ||| ||| || |||||||||||||||| |
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| T |
17855923 |
tacctgatcctgtggggggttatgctgtccgaggagcttatgatctattaacagagggtgccaatcctcttatggacgacacattggagctagtttggca |
17855824 |
T |
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| Q |
456 |
tcatca |
461 |
Q |
| |
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|||||| |
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|
| T |
17855823 |
tcatca |
17855818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 355 - 550
Target Start/End: Original strand, 30509996 - 30510192
Alignment:
| Q |
355 |
gctacctgaccctgtgggg-gttatactgttcgaggagcttatgttctattaacagtgggtgcacatcctcttttggccgaagcaatggagctagtttgg |
453 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |||||| || ||| || |||||||||||| ||||||||||||| ||||||||| |
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| T |
30509996 |
gctacctgaccctgtggggggttatactgttcgaggagcttatgttatattaatagagggcgctcatcctcttttgaccgaagcaatggatctagtttgg |
30510095 |
T |
|
| Q |
454 |
catcatcaagtccccttaaaggtctcgatttttgcttggagacttctccgggatcggttacctacaaaagcaaatttggcagctcgtggtgttctca |
550 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30510096 |
catcgtcaggtccccttaaaggtctcgatttttgcttggagacttctccgggatcggttaccttcaaaagcaaatttggcagctcgtggtgttctca |
30510192 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 355 - 550
Target Start/End: Original strand, 30550336 - 30550532
Alignment:
| Q |
355 |
gctacctgaccctgtgggg-gttatactgttcgaggagcttatgttctattaacagtgggtgcacatcctcttttggccgaagcaatggagctagtttgg |
453 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||| || ||| || |||||||||||| ||||||||||||| ||||||||| |
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| T |
30550336 |
gctacctgaccctgtggggggttatactgttcgaggagcttatgttatattaatagagggcgctcatcctcttttgaccgaagcaatggatctagtttgg |
30550435 |
T |
|
| Q |
454 |
catcatcaagtccccttaaaggtctcgatttttgcttggagacttctccgggatcggttacctacaaaagcaaatttggcagctcgtggtgttctca |
550 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30550436 |
catcgtcaggtccccttaaaggtctcgatttttgcttggagacttctccgggatcggttaccttcaaaagcaaatttggcagctcgtggtgttctca |
30550532 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 357 - 548
Target Start/End: Original strand, 35122659 - 35122851
Alignment:
| Q |
357 |
tacctgaccctgtggg-ggttatactgttcgaggagcttatgttctattaacagtgggtgcacatcctcttttggccgaagcaatggagctagtttggca |
455 |
Q |
| |
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||||||||||| |||| |||||| |||||||||||||||||| ||| ||||||| |||||| |||||||||| | ||| || |||||||||||||||| |
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| T |
35122659 |
tacctgaccctttgggaggttatgctgttcgaggagcttatgatcttttaacagagggtgccaatcctcttttagacgacgctttggagctagtttggca |
35122758 |
T |
|
| Q |
456 |
tcatcaagtccccttaaaggtctcgatttttgcttggagacttctccgggatcggttacctacaaaagcaaatttggcagctcgtggtgttct |
548 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35122759 |
tcatcaggtccccttgaaggtctcgatttttgcttggagacttcttcgggatcggttacccacaaaagcaaatttggcagctcgtggtgttct |
35122851 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 7e-66; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 42999781 - 42999634
Alignment:
| Q |
18 |
aaatcaaggtgcatactattaaaccatatagaaatttctaaagtcaagaatacattataaaaccaaactcttaatttcaagaactaaactatattccttc |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42999781 |
aaatcaaggtgcatactattaaaccatatagaaatttcaaaagtcaagaatacattataaaaccaaactcttaattttaagaactaaactatattccttc |
42999682 |
T |
|
| Q |
118 |
aaacaaacaaaaaagaactaaactatattctcta-gcttatgaaaaat |
164 |
Q |
| |
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||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
42999681 |
aaacaaacaaaaaagaactaaactaaattctctaggcttatgaaaaat |
42999634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 258 - 347
Target Start/End: Complemental strand, 42999470 - 42999381
Alignment:
| Q |
258 |
taaaattgaggtaaagcttgtaggtcaaagtaaaagacgagttttgcggaattggttatgtgtattttctagccttgtaacagaaaaaga |
347 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42999470 |
taaaattgaggtaaagcttgtaggtcaaagtaaaagacgagttttgcggaattggttatgtgtattttctagccttgtaacggaaaaaga |
42999381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 42999582 - 42999538
Alignment:
| Q |
159 |
aaaaatattgttggtgtttgctcatttcaactatatacgttcgtt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42999582 |
aaaaatattgttggtgtttgctcatttcaactatatacgttcgtt |
42999538 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 4e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 357 - 548
Target Start/End: Original strand, 16873445 - 16873637
Alignment:
| Q |
357 |
tacctgaccctgtggg-ggttatactgttcgaggagcttatgttctattaacagtgggtgcacatcctcttttggccgaagcaatggagctagtttggca |
455 |
Q |
| |
|
||||||||||| |||| |||||| ||||||||||||| |||| ||| ||||||| |||||| |||||||||| | || |||||||||||||||| |
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| T |
16873445 |
tacctgaccctttgggaggttatgctgttcgaggagcctatgatcttttaacagagggtgccaatcctcttttacacagcgctttggagctagtttggca |
16873544 |
T |
|
| Q |
456 |
tcatcaagtccccttaaaggtctcgatttttgcttggagacttctccgggatcggttacctacaaaagcaaatttggcagctcgtggtgttct |
548 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
16873545 |
tcatcaggtccccttgaaggtctcgatttttgcttggagacttcttcgggatcggttacccacaaaagcaaatttggcagctcgtggtgttct |
16873637 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 10915951 - 10915907
Alignment:
| Q |
307 |
aattggttatgtgtattttctagccttgtaacagaaaaagacaat |
351 |
Q |
| |
|
|||||||| ||| || ||||||||||||||||||||||||||||| |
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| T |
10915951 |
aattggttgtgtctaatttctagccttgtaacagaaaaagacaat |
10915907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0308 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0308
Description:
Target: scaffold0308; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 370 - 548
Target Start/End: Complemental strand, 17319 - 17141
Alignment:
| Q |
370 |
gggggttatactgttcgaggagcttatgttctattaacagtgggtgcacatcctcttttggccgaagcaatggagctagtttggcatcatcaagtcccct |
469 |
Q |
| |
|
||||||||| |||| ||||||||||||| ||| ||||||| |||||| |||||||| | | || || |||| ||||||||||||||||| ||||||| |
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| T |
17319 |
gggggttatgctgtccgaggagcttatgatcttttaacagagggtgccaatcctcttatagaagacgctttggacctagtttggcatcatcaggtcccct |
17220 |
T |
|
| Q |
470 |
taaaggtctcgatttttgcttggagacttctccgggatcggttacctacaaaagcaaatttggcagctcgtggtgttct |
548 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
17219 |
tgaaggtctcgatttttgcttggagacttcttcgggatcgtttacctacaaaagcaaatttggcagctcgtggtgttct |
17141 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 7e-38; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 440 - 548
Target Start/End: Complemental strand, 33804884 - 33804776
Alignment:
| Q |
440 |
tggagctagtttggcatcatcaagtccccttaaaggtctcgatttttgcttggagacttctccgggatcggttacctacaaaagcaaatttggcagctcg |
539 |
Q |
| |
|
|||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
33804884 |
tggagctagtttggcatcatcaggttcccttgaaggtctcaatttttgcttggagacttcttcgggatcggttacctacaagagcaaatttggcagctca |
33804785 |
T |
|
| Q |
540 |
tggtgttct |
548 |
Q |
| |
|
||||||||| |
|
|
| T |
33804784 |
tggtgttct |
33804776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 548
Target Start/End: Complemental strand, 4474796 - 4474693
Alignment:
| Q |
445 |
ctagtttggcatcatcaagtccccttaaaggtctcgatttttgcttggagacttctccgggatcggttacctacaaaagcaaatttggcagctcgtggtg |
544 |
Q |
| |
|
||||||| ||||||||| || || || ||||| || |||||||||||| | ||||| || ||| ||| ||||| |||||||| || ||||| ||||||| |
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| T |
4474796 |
ctagtttagcatcatcaggttccgttgaaggtatcaatttttgcttggcggcttcttcgaaatcagttgcctacgaaagcaaactttgcagcccgtggtg |
4474697 |
T |
|
| Q |
545 |
ttct |
548 |
Q |
| |
|
|||| |
|
|
| T |
4474696 |
ttct |
4474693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 360 - 407
Target Start/End: Complemental strand, 4474882 - 4474834
Alignment:
| Q |
360 |
ctgaccctgtggggg-ttatactgttcgaggagcttatgttctattaac |
407 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||| ||| ||||| |
|
|
| T |
4474882 |
ctgaccctgtggggggttatactgttcgaggagcctatgatcttttaac |
4474834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 454 - 535
Target Start/End: Complemental strand, 7555536 - 7555455
Alignment:
| Q |
454 |
catcatcaagtccccttaaaggtctcgatttttgcttggagacttctccgggatcggttacctacaaaagcaaatttggcag |
535 |
Q |
| |
|
|||||||| || ||||| ||||||||| | ||||||||| | || || | |||||| |||||||||||||||||| |||||| |
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|
| T |
7555536 |
catcatcaggttcccttgaaggtctcggtctttgcttggcggctccttcaggatcgtttacctacaaaagcaaatctggcag |
7555455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0369 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0369
Description:
Target: scaffold0369; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 522
Target Start/End: Original strand, 11287 - 11324
Alignment:
| Q |
485 |
ttgcttggagacttctccgggatcggttacctacaaaa |
522 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
11287 |
ttgcttggcgacttctcagggatcggttacctacaaaa |
11324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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