View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5247_low_5 (Length: 550)
Name: NF5247_low_5
Description: NF5247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5247_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 23 - 533
Target Start/End: Complemental strand, 28037268 - 28036758
Alignment:
| Q |
23 |
tgtagaatgcatacacattcccaccaccgcccacagccagaacctccttggccccacatacaacaaaacatttacacattacattgcttccctcaatact |
122 |
Q |
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| T |
28037268 |
tgtagaatgcatacacattcccaccaccgcccacagccagaacctccttggccccacatacaacaaaacatttacacattacattgcttccctcaatact |
28037169 |
T |
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| Q |
123 |
aaaagtttgcataaacaaaaaacaacaacaataacaacgtatcaccgccaccatgtcgagcatcgtgaaggagatcctggctcggccgatacaaatggcg |
222 |
Q |
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| T |
28037168 |
aaaagtttgcataaacaaaagacaacaacaataacaacgtatcaccgccaccatgtcgagcatcgtgaaggagatcctggctcggccgatacaaatggct |
28037069 |
T |
|
| Q |
223 |
gaccaggcatctaaatcagcggacgaggcacaaaatttcaaacaagaatgtctagaattaaacaccaaaacagaaaaaatcgcaggccttcttcgacaag |
322 |
Q |
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| T |
28037068 |
gaccaggtatctaaatcagcggacgaggcacaaaatttcaaacaagaatgtctagaattaaaaaccaaaacagaaaaactcgcaggccttcttcgacaag |
28036969 |
T |
|
| Q |
323 |
ctgcaaggaatagcaatgacctatatgaacgtcccacaagacgaatcatcgatgacactgaacaagtcctcgacaaagcccttggattagtcatgaaatg |
422 |
Q |
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| T |
28036968 |
ctgcaaggaatagcaatgacctatatgaacgtcccacaagacgaatcatcgatgacacagaacaagtcctcgacaaagcccttggattagtcatgaaatg |
28036869 |
T |
|
| Q |
423 |
tcgtgtaaacggcataaaacgtctcttcaccatcattcccaccgccgcctttcgcaaaacctcaatgcagttagaaaattcccttggagatgttcaatgg |
522 |
Q |
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| T |
28036868 |
tcgtgtaaacggcataaaacgtctcttcaccatcattcccaccaccgcctttcgcaaaacctcaatgcagttagaaaattcccttggagatattcaatgg |
28036769 |
T |
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| Q |
523 |
ttgttaagagt |
533 |
Q |
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| T |
28036768 |
ttgttaagagt |
28036758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 427
Target Start/End: Original strand, 8756206 - 8756284
Alignment:
| Q |
349 |
gaacgtcccacaagacgaatcatcgatgacactgaacaagtcctcgacaaagcccttggattagtcatgaaatgtcgtg |
427 |
Q |
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|||||||| |||| ||| |||||||| || || |||||||| ||||||||||| ||| ||||||| | |||||||||| |
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| T |
8756206 |
gaacgtccaacaaaacggatcatcgaagaaacagaacaagtactcgacaaagcactttcattagtcctaaaatgtcgtg |
8756284 |
T |
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