View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5247_low_7 (Length: 471)
Name: NF5247_low_7
Description: NF5247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5247_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 13225838 - 13225376
Alignment:
| Q |
1 |
agatcaacgtcggtgattgaaggaagagttgagatttcataaggaatgattccggtgaggttgtttttgcttaggtttaactgaagcagtgtttcgcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13225838 |
agatcaacgtcggtgattgaaggaagagttgagatttcgtaaggaatgattccggtgaggttgtttttgcttaggtttaactgaagcagtttttcgcaat |
13225739 |
T |
|
| Q |
101 |
caccaatgttccatggaattgtgccggtgattgaatttccttgtaattcgatcttgtagatcgatttgcaatcagaaaaatcggggatttgaccggtgat |
200 |
Q |
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| T |
13225738 |
caccaatgttccatggaattgtgccggtgattgaatttccttgtaattcgatcttgtagatcgatttgcaatcagaaaaatcgggaatttgaccggtgat |
13225639 |
T |
|
| Q |
201 |
tttcgagaatgaagctgagaaaatctgaagattacttgaattccaaatgctgttaggtaattcgctttcaaaagagtttcctgagatgtttagatattgt |
300 |
Q |
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| T |
13225638 |
tttcgagaatgaagctgagaaaatctgaagattacttgaattccaaatgctgttaggtaattcgctttcaaaagagtttcctgagatgtttagatattgt |
13225539 |
T |
|
| Q |
301 |
aggctcccaaattcttgaggaatttcccctttgaaattgttgttgcttaaatcaagataagttaaatttggaagcattgtaagtgtttgtggaattgacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
13225538 |
aggctcccaaattcttgaggaatttcccctttgaaattgttgttgcttaaatcaaggtaggttaaatttggaagcattgtaagtgtttgtggaattgacc |
13225439 |
T |
|
| Q |
401 |
cattgagattgttgttttggatacgaactcgaatgagtgaggtgcaatttgtgagtgatgatg |
463 |
Q |
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| T |
13225438 |
cattgagattgttgttttggatacgaactcgaatgagtgaggtgcaatttgtgagtgatgatg |
13225376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 13147935 - 13148377
Alignment:
| Q |
1 |
agatcaacgtcggtgattgaaggaagagttgagatttcataaggaatgattccggtgaggttgtttttgcttaggtttaactgaagcagtgtttcgcaat |
100 |
Q |
| |
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|||||||| |||| ||||||||||| | | |||||||| ||| ||| |||| || || | |||||| || | || ||||||| ||| |||| |||| |
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| T |
13147935 |
agatcaacttcggagattgaaggaatcttcgtgatttcatgaggtatggttcctgtcagatagtttttactgatattcaactgaattagtttttcacaat |
13148034 |
T |
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| Q |
101 |
caccaatgttccatggaattgtgccggtgattgaatttccttgtaattcgatcttgtagatcgatttgcaatcagaaaaatcggggatttgaccggtgat |
200 |
Q |
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|||| ||||||| |||||| || ||| |||||||||||||||||||||||||| ||| || || |||| || |||| ||| ||| ||||||||| |
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| T |
13148035 |
caccgatgttccttggaatggttccgttgattgaatttccttgtaattcgatccggtaaatattttggcaaccaatgaaattgggaattctaccggtgat |
13148134 |
T |
|
| Q |
201 |
tttcgagaatgaagctgagaaaatctgaagattacttgaattccaaatgctgttaggtaattcgctttcaaaagagtttcctgagatgtttagatattgt |
300 |
Q |
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||| || |||||||||||||||| || || ||| ||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||| |||||| |
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| T |
13148135 |
tttggaaaatgaagctgagaaaaattgtaggttagttgaattccaaatgctgtttggtaaattgctttcaaatgagtttcctgagatgtttaggtattgt |
13148234 |
T |
|
| Q |
301 |
aggctcccaaattcttgaggaatttcccctttgaaattgttgttgcttaaatcaagataagttaaatttggaagcattgtaagtgtttgtggaattgacc |
400 |
Q |
| |
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||| | | |||| | | ||||||| || ||||||||||||||||||||||| || || ||||||||||||| || |||||| |||||||||||||||| |
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| T |
13148235 |
aggttttctaattttagtggaattttgccattgaaattgttgttgcttaaatctaggtaggttaaatttggaaccagtgtaagggtttgtggaattgacc |
13148334 |
T |
|
| Q |
401 |
cattgagattgttgttttggatacgaactcgaatgagtgaggt |
443 |
Q |
| |
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| ||||| |||||||||||||| ||||| | | |||||||||| |
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| T |
13148335 |
cgttgagtttgttgttttggattcgaaccctagtgagtgaggt |
13148377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 288 - 422
Target Start/End: Original strand, 13314817 - 13314951
Alignment:
| Q |
288 |
gtttagatattgtaggctcccaaattcttgaggaatttcccctttgaaattgttgttgcttaaatcaagataagttaaatttggaagcattgtaagtgtt |
387 |
Q |
| |
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|||||| ||| ||||| |||| |||| ||| ||||||| || ||||||||||||||||||| |||||| | ||||| || |||||||| ||||| ||| |
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| T |
13314817 |
gtttaggtatcgtaggttccctaatttttgtggaatttttccattgaaattgttgttgcttagatcaaggaatgttaatttaggaagcatggtaagggtt |
13314916 |
T |
|
| Q |
388 |
tgtggaattgacccattgagattgttgttttggat |
422 |
Q |
| |
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|||||||||| ||| ||||| |||||||||||||| |
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| T |
13314917 |
tgtggaattggcccgttgagtttgttgttttggat |
13314951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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