View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5248-Insertion-2 (Length: 780)
Name: NF5248-Insertion-2
Description: NF5248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5248-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 612; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 6 - 750
Target Start/End: Original strand, 33993377 - 33994133
Alignment:
| Q |
6 |
caccattctcttcactgcagcaagagacttagagactttgactcttgatcgtgaaacacttcagcttaaagactcattagcacttgaatatgcagagtta |
105 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33993377 |
caccattctcttcactgcagcaagagacttagagactttgactcttgatcgtgaaacacttcagcttaaagactcattagcacttaaatatgcagagtta |
33993476 |
T |
|
| Q |
106 |
gtgtatgctggaagatggtttgatccacttcgcgaatcgatggattcattcatggagaagatctcacagactacaacaggttcagtgagtttgaaactgt |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993477 |
gtgtatgctggaagatggtttgatccacttcgcgaatcgatggattcattcatggagaagatctcacagactacaacaggttcagtgagtttgaaactgt |
33993576 |
T |
|
| Q |
206 |
ataaaggtagtgcttctgtgacgggtcggaagagtccttatagtttatatagggaagatatttcttcatttgagagtggggagatatataatcatgctga |
305 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993577 |
ataaaggtagtgcttctgtgacgggtcggaagagtccttatagtttatatagggaagatatttcttcatttgagagtggggagatatataatcatgctga |
33993676 |
T |
|
| Q |
306 |
tgctgttgggtttataaagctttatggtcttccaatgaggatcagagccatgatggaacaaggcatttaaatgttactttgtttggactattannnnnnn |
405 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993677 |
tgctgttgggtttataaagctttatggtcttccaatgaggatcagagccatgatggaacaaggcatttaaatgttactttgtttggactatta--tgtgt |
33993774 |
T |
|
| Q |
406 |
nnnnnnnncttgcttgttcttgacaatgtttggggaacttttattattgtgggaaataaatgacgtgaagtgattggcatgtgcttagagaagcaaactt |
505 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993775 |
gtgtgtgtcttgcttgttcttgacaatgtttgtggaacttttattattgtgggaaataaatgacgtgaagtgattggcatgtgcttagagaagcaaactt |
33993874 |
T |
|
| Q |
506 |
gattcgaataaagctatttgtttggcaaaactgcatcatgaatcctttattaccatttttcatgccgagttagtcatttat-----------------aa |
588 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
33993875 |
gattcgaataaagctatttgtttggcaaaactgcatcatgaatcctttattaccatttttcatgtcgagttagtcatttatgtttaaaaatgtttaagaa |
33993974 |
T |
|
| Q |
589 |
tgtcaatattgttggaccaaacttcactttttcatcctacgctatcaaaagccttacgtggccattcaaaaagataaatttacattttcgattcatcaag |
688 |
Q |
| |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33993975 |
tgtcaatatt-ttggaccaaacttcac-ttttcatcctacgctatcaaaagccttacgtggccattcaaaaagataaa-ttacattttcgattcatcaag |
33994071 |
T |
|
| Q |
689 |
aaaacatctaaattacatcatagtgagtgttttaatatccaatccatcaaaatcaacacatc |
750 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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|
| T |
33994072 |
aaaacatctaaattacatcatagtgagtgttataatatccaatccatcaaaattaacacatc |
33994133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 6 - 244
Target Start/End: Original strand, 34000379 - 34000617
Alignment:
| Q |
6 |
caccattctcttcactgcagcaagagacttagagactttgactcttgatcgtgaaacacttcagcttaaagactcattagcacttgaatatgcagagtta |
105 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||| ||| || || ||||||||||||||||||||||||||||| |||||| || | |||||||||||| |
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| T |
34000379 |
caccattttcttcaccgcagcaagagacttagagagtttaacactcgatcgtgaaacacttcagcttaaagactcgttagcaattaagtatgcagagtta |
34000478 |
T |
|
| Q |
106 |
gtgtatgctggaagatggtttgatccacttcgcgaatcgatggattcattcatggagaagatctcacagactacaacaggttcagtgagtttgaaactgt |
205 |
Q |
| |
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|||||||||||||| ||||| ||||| ||||| || || |||||| |||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
34000479 |
gtgtatgctggaaggtggttcgatcctcttcgtgagtcaatggatgcattcatggaaaagatctcagagattacaacaggttcagtgagtttgaaactgt |
34000578 |
T |
|
| Q |
206 |
ataaaggtagtgcttctgtgacgggtcggaagagtcctt |
244 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||| |
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| T |
34000579 |
ataaaggcagtgcttctgtgacgggtcggaagagtcctt |
34000617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 5e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 41 - 380
Target Start/End: Complemental strand, 18852556 - 18852217
Alignment:
| Q |
41 |
ctttgactcttgatcgtgaaacacttcagcttaaagactcattagcacttgaatatgcagagttagtgtatgctggaagatggtttgatccacttcgcga |
140 |
Q |
| |
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||||||| |||||||| |||||| | ||| | ||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18852556 |
ctttgacacttgatcgagaaacaatacaggtcaaagattcattagcacttaaatatgcagagttagtgtatgccggaagatggtttgatccacttcgcga |
18852457 |
T |
|
| Q |
141 |
atcgatggattcattcatggagaagatctcacagactacaacaggttcagtgagtttgaaactgtataaaggtagtgcttctgtgacgggtcggaagagt |
240 |
Q |
| |
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||| |||||| | || ||| ||||||| || |||| ||||||||||| |||| ||||||| | || |||||| || | |||| || ||| ||||||| |
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|
| T |
18852456 |
atccatggatgcctttatgcagaagattacagagaccacaacaggttctgtgactttgaaattatacaaaggttctgttactgtaacaggtaggaagagc |
18852357 |
T |
|
| Q |
241 |
ccttatagtttatatagggaagatatttcttcatttgagagtggggagatatataatcatgctgatgctgttgggtttataaagctttatggtcttccaa |
340 |
Q |
| |
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|| | ||| | |||||| ||||||| || |||||||||| | | || |||||| |||| |||||||||| ||| ||||| |||||| |||||||||| |
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| T |
18852356 |
ccctttagcctgtataggcaagatatctcatcatttgagaatagtgatatatatgatcaagctgatgctgctggttttatccggctttacggtcttccaa |
18852257 |
T |
|
| Q |
341 |
tgaggatcagagccatgatggaacaaggcatttaaatgtt |
380 |
Q |
| |
|
||| | || | || ||| | || |||||||||||| |||| |
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| T |
18852256 |
tgaaggtccgggcaatgcttgagcaaggcatttaagtgtt |
18852217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 41 - 339
Target Start/End: Complemental strand, 42865667 - 42865369
Alignment:
| Q |
41 |
ctttgactcttgatcgtgaaacacttcagcttaaagactcattagcacttgaatatgcagagttagtgtatgctggaagatggtttgatccacttcgcga |
140 |
Q |
| |
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||||||| |||||||| |||||| | ||| | ||||| ||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
42865667 |
ctttgacacttgatcgagaaacaatacaggtgaaagatacattagcccttaaatatgcagagttagtgtatgctggtagatggtttgatccacttcgtga |
42865568 |
T |
|
| Q |
141 |
atcgatggattcattcatggagaagatctcacagactacaacaggttcagtgagtttgaaactgtataaaggtagtgcttctgtgacgggtcggaagagt |
240 |
Q |
| |
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|||||||| | || ||| ||||||| | ||| ||||||||||| || | ||||||| |||| |||||| || | |||| | ||| ||||||| |
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|
| T |
42865567 |
gtcgatggacgcctttatgcagaagattactgcgaccacaacaggttccgttactttgaaattgtacaaaggttctgttactgtagctggtatgaagagt |
42865468 |
T |
|
| Q |
241 |
ccttatagtttatatagggaagatatttcttcatttgagagtggggagatatataatcatgctgatgctgttgggtttataaagctttatggtcttcca |
339 |
Q |
| |
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|||| ||| | |||||| ||||||| || ||||||||| || | ||||||||| |||| |||||||||| ||| ||||| |||||| ||||||||| |
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|
| T |
42865467 |
ccttttagcctgtataggcaagatatctcatcatttgagggtagtgagatatatgatcaagctgatgctgctggttttatccggctttacggtcttcca |
42865369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 679 - 710
Target Start/End: Complemental strand, 19045269 - 19045238
Alignment:
| Q |
679 |
attcatcaagaaaacatctaaattacatcata |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
19045269 |
attcatcaagaaaacatctaaattacatcata |
19045238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 650 - 710
Target Start/End: Complemental strand, 41194314 - 41194255
Alignment:
| Q |
650 |
ccattcaaaaagataaatttacattttcgattcatcaagaaaacatctaaattacatcata |
710 |
Q |
| |
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||||| ||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||| |
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|
| T |
41194314 |
ccatttaaaaagataaatt-acatcttcaattcatcaagataacatctaaattacatcata |
41194255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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