View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5248-Insertion-3 (Length: 696)
Name: NF5248-Insertion-3
Description: NF5248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5248-Insertion-3 |
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| [»] chr1 (9 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 665; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 8 - 696
Target Start/End: Complemental strand, 51455335 - 51454647
Alignment:
| Q |
8 |
cgtggaagggtggatcactaacatcgatgagtttaaaagaccgcaagcatgctttgcaattgcaattatcacagcacacaggacatgccttggcaatatc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51455335 |
cgtggaagggtggatcactaacatcgatgagtttaaaagaccgcaagcatgctttgcaattgcaattatcacagcacacaggacatgccttggcaatatc |
51455236 |
T |
|
| Q |
108 |
actctctttcagtttaggataccttaacaagaggcagcaaaaaagcatagtttgatcaatatttcatcaaccaaagtccaaacgtgtaatatgtgcaata |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51455235 |
actctctttcagtttaggataccttaacaagaggcagcaaaaaagcatagtttgatcaatatttcatcaaccaaagtccaaacgtgtaatatgtgcaata |
51455136 |
T |
|
| Q |
208 |
acttcggtctacatcccaattatcaaacaaggcatattaaaaaacaatagagcaaactgacaaaacataggatgaagcaagttaaacaaagtaaaacaga |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51455135 |
acttcggtctacatcccaattatcaaacaaggcatattaaagaacaatagagcaaactgacaaaacataggatgaagcaagttaaacaaagtaaaacaga |
51455036 |
T |
|
| Q |
308 |
agttaaggaagttgtaccaattgtttaaacaaggtatgcaatatcttctccgtttgcattttgtgcatctgacaaccctgcccttatcgtttctctgaca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51455035 |
agttaaggaagttgtaccaattgtttaaacaaggtatgcaatatcttctccgtttgcattttgtgcatctgacaaccctgcccttatcgtttctctgaca |
51454936 |
T |
|
| Q |
408 |
ttgatgacacattaaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattacatacatataatgccaaactcaaacatataaa |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51454935 |
ttgatgacacattaaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattacatacatataatgccaaactcaaacatataaa |
51454836 |
T |
|
| Q |
508 |
aatgaacagagtgatgatcatgtaatgttaccttagcattactctccctgattttaagtttcttgtggacttgtggaacctcatttttggtggtttcctt |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51454835 |
aatgaacagagtgatgatcatgtaatgttaccttagcattactctccctgattttaagtttcttgaggacttgtggaacctcatttttggtggtttcctt |
51454736 |
T |
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| Q |
608 |
ctccgcctttatctttctgccgcgtctctttctcaccagttgaaatgatgaagagcccccggcatcattatcaccttcaccagcttctt |
696 |
Q |
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| T |
51454735 |
ctccacctttctctttctgccgcgtctctttctcaccggttgaaatgatgaagagccgccggcatcattatcaccttcaccagcttctt |
51454647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 278 - 481
Target Start/End: Complemental strand, 51496553 - 51496350
Alignment:
| Q |
278 |
gatgaagcaagttaaacaaagtaaaacagaagttaaggaagttgtaccaattgtttaaacaaggtatgcaatatcttctccgtttgcattttgtgcatct |
377 |
Q |
| |
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|||||||||||||||||||||||||||| |||| || ||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
51496553 |
gatgaagcaagttaaacaaagtaaaacataagtaaataaagttgtaccagttgtttaaacatggtatgcaatatcttttccgtttgcattttgtgcatct |
51496454 |
T |
|
| Q |
378 |
gacaaccctgcccttatcgtttctctgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattaca |
477 |
Q |
| |
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|||||||||||||| || ||||||||||||||||| ||||| |||||| ||||||| |||||||||||||||| ||||| |||||||| |||||||||| |
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| T |
51496453 |
aacaaccctgcccttgtcatttctctgacattgatggcacatcaaggattcctcttcgatccactgttgattgagaaacattaacagaatcacaattaca |
51496354 |
T |
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| Q |
478 |
taca |
481 |
Q |
| |
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|||| |
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| T |
51496353 |
taca |
51496350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 300 - 454
Target Start/End: Complemental strand, 51479553 - 51479399
Alignment:
| Q |
300 |
aaaacagaagttaaggaagttgtaccaattgtttaaacaaggtatgcaatatcttctccgtttgcattttgtgcatctgacaaccctgcccttatcgttt |
399 |
Q |
| |
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||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
51479553 |
aaaacagaagtgatggaagttgtaccaattgtttaaacaaggtatgcaaaatcttttccgtttgcattttgtgcatctgacaaccctgcccttgtcattt |
51479454 |
T |
|
| Q |
400 |
ctctgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaa |
454 |
Q |
| |
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|||||||||||||| ||||||||||| ||||| |||||||||||| |||||||| |
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| T |
51479453 |
ctctgacattgatggcacattaaggactcctctgcaatccactgttaattgaaaa |
51479399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 403 - 507
Target Start/End: Complemental strand, 7996975 - 7996867
Alignment:
| Q |
403 |
tgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaaac-agtaacagaaccacaattacat---acatataatgccaaactcaa |
498 |
Q |
| |
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||||||||||| | | |||||||| |||||||||||||| |||||||||||||| | |||||||| |||||||||| ||||||||| |||||||||| |
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| T |
7996975 |
tgacattgatggctcgttaaggattcctcttcaatccaccgttgattgaaaaacaattaacagaatgacaattacatgcaacatataattccaaactcaa |
7996876 |
T |
|
| Q |
499 |
acatataaa |
507 |
Q |
| |
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|||| |||| |
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| T |
7996875 |
acatgtaaa |
7996867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 30207548 - 30207602
Alignment:
| Q |
50 |
gcaagcatgctttgcaattgcaattatcacagcacacaggacatgccttggcaat |
104 |
Q |
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|||||||||||||||||||||||||| |||||||| | ||||||||||||||||| |
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| T |
30207548 |
gcaagcatgctttgcaattgcaattaccacagcaccctggacatgccttggcaat |
30207602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 51479793 - 51479739
Alignment:
| Q |
49 |
cgcaagcatgctttgcaattgcaattatcacagcacacaggacatgccttggcaa |
103 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| |
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| T |
51479793 |
cgcaagcatgctttgcaattgcaattaccacagcacaccggacatgcctcggcaa |
51479739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 420 - 481
Target Start/End: Original strand, 30208492 - 30208553
Alignment:
| Q |
420 |
taaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattacataca |
481 |
Q |
| |
|
|||||| || |||||||||| || |||||||| ||||||||||||||||||||||||||||| |
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| T |
30208492 |
taaggacccatcttcaatcccctattgattgagaaacagtaacagaaccacaattacataca |
30208553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 51496805 - 51496757
Alignment:
| Q |
49 |
cgcaagcatgctttgcaattgcaattatcacagcacacaggacatgcct |
97 |
Q |
| |
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|||||||| |||||||||||||||||| |||||||||| |||||||||| |
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| T |
51496805 |
cgcaagcaagctttgcaattgcaattaccacagcacactggacatgcct |
51496757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 413
Target Start/End: Original strand, 30208328 - 30208464
Alignment:
| Q |
281 |
gaagcaagttaaacaaagtaaaacagaagttaaggaagttgtac----caattgtttaaacaaggtatgcaatatcttctccgtttgcattttgtgcatc |
376 |
Q |
| |
|
|||||| |||||||| | ||||||| |||||||||||||||||| ||| ||| | |||| |||||||| || | |||| | |||||| |||||| |
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| T |
30208328 |
gaagcacgttaaacagaataaaacataagttaaggaagttgtacgtaccaacggttaatacaaagtatgcaaaatttcttccggtcgcatttcgtgcatt |
30208427 |
T |
|
| Q |
377 |
tgacaaccctgcccttatcgtttctctgacattgatg |
413 |
Q |
| |
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| |||||||||||||| || ||||| | ||||||||| |
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| T |
30208428 |
tcacaaccctgcccttgtcatttcttttacattgatg |
30208464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 346 - 452
Target Start/End: Complemental strand, 27395621 - 27395515
Alignment:
| Q |
346 |
caatatcttctccgtttgcattttgtgcatctgacaaccctgcccttatcgtttctctgacattgatgacacattaaggatccctcttcaatccactgtt |
445 |
Q |
| |
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||||||||| ||||||||||||| |||||||||||||||||||| | || ||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27395621 |
caatatcttttccgtttgcatttggtgcatctgacaaccctgccactgtcatttctttgacattgatgacacattaaggactcctcttcaatccactgtt |
27395522 |
T |
|
| Q |
446 |
gattgaa |
452 |
Q |
| |
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|||||| |
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| T |
27395521 |
tattgaa |
27395515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 578 - 664
Target Start/End: Complemental strand, 43160133 - 43160047
Alignment:
| Q |
578 |
ttgtggaacctcatttttggtggtttccttctccgcctttatctttctgccgcgtctctttctcaccagttgaaatgatgaagagcc |
664 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| ||| |||||||||||| | |||||||| || ||||||||||||||||||| |
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| T |
43160133 |
ttgtggaacctcattttcggtggtttccttctccgattttctctttctgccgcatttctttctctccggttgaaatgatgaagagcc |
43160047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 43160254 - 43160142
Alignment:
| Q |
12 |
gaagggtggatcactaacatcgatgagtttaaaagaccgcaagcatgctttgcaattgcaattatcacagcacacaggacatgccttggcaatatcactc |
111 |
Q |
| |
|
|||||| ||||||| |||| ||||||||| |||| || ||||| ||||| ||||||||||||| ||| |||||||||||||||| ||||| ||| || |
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| T |
43160254 |
gaagggaggatcaccgacattaatgagtttagaagatcgtaagcacgctttacaattgcaattattacaacacacaggacatgcctcggcaacatcgctt |
43160155 |
T |
|
| Q |
112 |
tctttcagtttag |
124 |
Q |
| |
|
||||||| ||||| |
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| T |
43160154 |
tctttcaatttag |
43160142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 4299405 - 4299358
Alignment:
| Q |
50 |
gcaagcatgctttgcaattgcaattatcacagcacacaggacatgcct |
97 |
Q |
| |
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||||||||||||||||||||| ||| |||||||||| |||||||||| |
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| T |
4299405 |
gcaagcatgctttgcaattgctgttaccacagcacaccggacatgcct |
4299358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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