View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5248-Insertion-4 (Length: 505)
Name: NF5248-Insertion-4
Description: NF5248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5248-Insertion-4 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 9 - 499
Target Start/End: Complemental strand, 7008616 - 7008127
Alignment:
| Q |
9 |
gaactctttacatataaatatacacgtgaattgttgttgagtttgactcataatttactcataagcgagaaaaacactcgagcaggaaagcattgtatgc |
108 |
Q |
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| T |
7008616 |
gaactctttgcatataaatatacacgtgaattgttgttgagtatgactcatagtttactcataagcgagaaaagtgctcgagcaggcaagcattgtacgc |
7008517 |
T |
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| Q |
109 |
acgggcatgatgagttgcatcaacacttttgatagaaggtgtgtcccgttgtttgacactgacacaacaccaacacttgattacattgaattatgtcatt |
208 |
Q |
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| T |
7008516 |
acgtgcatgatgagttgc-tcaacacttttgattgaaggtgtgtcccattgtttgacactgacagaacaccaacacttgattacattgaattatgtcatt |
7008418 |
T |
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| Q |
209 |
ttattggtgttgacgtgtatgtgtcagggttgtgtctgtgtctgtgcttcataggttatgagtgtacgacaatgttaacattaattttcttgttttatta |
308 |
Q |
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| T |
7008417 |
ttattggtgttgacatgtatgtgtcagggtcgtgtctgtgtctgtgcttcataggttatgagtgtacgacaatattaacattaattttcttgttttatta |
7008318 |
T |
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| Q |
309 |
aactattctgtttaaagtttcacaccattcattcatacttggtcggggatgttcattgcttccccacaacatgagtgcaaaatattactcaaatagaata |
408 |
Q |
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| T |
7008317 |
aactattctgtttaaagtttcacaccattcattcatacttggtcggggatgttcattgcttccccacaacatgagtgcaaaatattactcaaatagaata |
7008218 |
T |
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| Q |
409 |
acaagaaattgtgtgcatcctagtcattttggcttaggacaaattaaattatggacttcttttctcttatgactagccaaacgtataagat |
499 |
Q |
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| T |
7008217 |
acaagaaattgtgtgcatcctagtcattttggcttaggacaaattaaattatggacttcttttctcttatgactaaccaaacgtataagat |
7008127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 29049947 - 29049905
Alignment:
| Q |
168 |
tgacacaacaccaacacttgattacattgaattatgtcatttt |
210 |
Q |
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| T |
29049947 |
tgacacaacaccaacacatgattacattgaattatgtaatttt |
29049905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 7442928 - 7442863
Alignment:
| Q |
149 |
gtgtcccgttgtttgacactgacacaacaccaacacttg--attacattgaattatgtcattttat |
212 |
Q |
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| T |
7442928 |
gtgtcccggtgtccgacactgatacaacaccaacacttgtaattacactgaattatgtaattttat |
7442863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 18104 - 18147
Alignment:
| Q |
169 |
gacacaacaccaacacttg--attacattgaattatgtcatttt |
210 |
Q |
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| T |
18104 |
gacacaacaccaacacttgcgattacattgaattatgttatttt |
18147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 5937467 - 5937515
Alignment:
| Q |
206 |
attttattggtgttgacgtgtatgtgtcagggttgtgtctgtgtctgtg |
254 |
Q |
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| T |
5937467 |
attttatccgtgttgacgtgtctgtgtcagtgttatgtctgtgtctgtg |
5937515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 2039848 - 2039888
Alignment:
| Q |
170 |
acacaacaccaacacttgattacattgaattatgtcatttt |
210 |
Q |
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| T |
2039848 |
acacaacaccaatacatgattacattgaatcatgtcatttt |
2039888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 37496767 - 37496724
Alignment:
| Q |
169 |
gacacaacaccaacacttg--attacattgaattatgtcatttt |
210 |
Q |
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| T |
37496767 |
gacacaacaccgacacttgtgattacattgaattatgtcatttt |
37496724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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