View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5248-Insertion-5 (Length: 468)

Name: NF5248-Insertion-5
Description: NF5248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5248-Insertion-5
NF5248-Insertion-5
[»] chr4 (5 HSPs)
chr4 (51-333)||(19625253-19625550)
chr4 (334-468)||(19605850-19605984)
chr4 (337-464)||(17959778-17959905)
chr4 (8-54)||(19625569-19625615)
chr4 (338-443)||(10112411-10112516)
[»] chr5 (6 HSPs)
chr5 (348-468)||(26132604-26132723)
chr5 (340-468)||(13456885-13457013)
chr5 (328-465)||(23595671-23595810)
chr5 (337-454)||(17364081-17364198)
chr5 (328-415)||(37279976-37280066)
chr5 (410-468)||(26867852-26867910)
[»] scaffold0417 (1 HSPs)
scaffold0417 (328-468)||(3515-3655)
[»] chr7 (7 HSPs)
chr7 (328-468)||(20148517-20148657)
chr7 (368-465)||(16175156-16175253)
chr7 (328-465)||(16196543-16196680)
chr7 (341-468)||(16094651-16094778)
chr7 (337-454)||(23099800-23099916)
chr7 (410-464)||(8327270-8327324)
chr7 (413-454)||(17161329-17161370)
[»] chr3 (7 HSPs)
chr3 (337-464)||(15538955-15539082)
chr3 (337-464)||(19632032-19632159)
chr3 (337-464)||(19659925-19660052)
chr3 (342-454)||(19614326-19614438)
chr3 (337-464)||(2547190-2547317)
chr3 (328-467)||(40354406-40354545)
chr3 (334-444)||(14305496-14305606)
[»] chr6 (8 HSPs)
chr6 (338-464)||(23299570-23299696)
chr6 (337-464)||(14354211-14354338)
chr6 (334-401)||(22545764-22545831)
chr6 (368-463)||(19977394-19977489)
chr6 (382-454)||(12487701-12487773)
chr6 (328-467)||(12463756-12463895)
chr6 (337-454)||(23294361-23294478)
chr6 (410-455)||(23350245-23350290)
[»] scaffold0111 (1 HSPs)
scaffold0111 (368-467)||(30320-30419)
[»] scaffold0039 (1 HSPs)
scaffold0039 (349-468)||(106035-106154)
[»] scaffold0001 (1 HSPs)
scaffold0001 (337-455)||(154904-155022)
[»] chr8 (2 HSPs)
chr8 (328-468)||(25263175-25263316)
chr8 (410-467)||(21695078-21695135)
[»] scaffold0190 (1 HSPs)
scaffold0190 (338-464)||(1623-1749)
[»] scaffold0093 (1 HSPs)
scaffold0093 (410-468)||(51807-51865)
[»] chr2 (1 HSPs)
chr2 (410-464)||(28774207-28774261)
[»] scaffold1114 (1 HSPs)
scaffold1114 (382-455)||(1847-1920)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 51 - 333
Target Start/End: Complemental strand, 19625550 - 19625253
Alignment:
Q  51 ataagcacttccctgaaaagtgcttttatataagtagataaataagtcccttaattatgagtcctcattattaatgcatatttttagttaggct------ 144  Q
    |||||||||| || ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||          
T  19625550 ataagcacttaccagaaaagtgcgtttatataagtagataaataagtcccttaattttgagtcctcattattaatgcatatttttagttaggcttgggac 19625451  T
Q  145 ---------atcgtgtattattacaataaggcaaatatctgccatggttttcaacctctaaatgccatttaagctgttactaccgttgtgtcaaaatcat 235  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19625450 ttttgtaagatcgtgtattattacaataaggcaaatatctgccatggttttcaacctctaaatgccatttaagctgttactactgttgtgtcaaaatcat 19625351  T
Q  236 aataaaatgcctnnnnnnnnntcataacaaaaatactacctctgttttaaattatacgctttggaaaacaaattgtttcaaattatatgttgttttat 333  Q
    ||||||||||||         |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  19625350 aataaaatgcctcaaaaaaaatcataataaaaatactacctctgttctaaattatacgctttggaaaacaaattgtttgaaattatatgttattttat 19625253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 334 - 468
Target Start/End: Complemental strand, 19605984 - 19605850
Alignment:
Q  334 caatttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaac 433  Q
    ||||||||| ||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19605984 caatttcatccaatcttcacaaactacaacaacaattcaaaccccaataacatacaaacatatataatcatatataaagtgaatttacacatgtttgaac 19605885  T
Q  434 aataatcactcatcaattcatgacttacacttaat 468  Q
    |||||||||||||||||||||| |||||| |||||    
T  19605884 aataatcactcatcaattcatggcttacaattaat 19605850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 337 - 464
Target Start/End: Original strand, 17959778 - 17959905
Alignment:
Q  337 tttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaat 436  Q
    |||||||||| |||||||||| || |||   ||||||| ||||  || || |||||||| |||| ||| | | ||||||||||| |||||||| ||||||    
T  17959778 tttcattcaaacttcacaaacaaccacacaaattcaaaccccatcaagatacaaacataaataagcatttgtgaagtgaatttaaacatgtttcaacaat 17959877  T
Q  437 aatcactcatcaattcatgacttacact 464  Q
    ||||||||||||||||||||||||||||    
T  17959878 aatcactcatcaattcatgacttacact 17959905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 19625615 - 19625569
Alignment:
Q  8 gttacctaccccttaagattccacaaaaattaaacaagtttggataa 54  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  19625615 gttacctaccccttaagattccacaaaaattaaacaagtttggataa 19625569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 443
Target Start/End: Complemental strand, 10112516 - 10112411
Alignment:
Q  338 ttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaata 437  Q
    |||||| || |||| || || ||| |||| ||| ||| ||||| ||||| ||||||||||||||||||||| |||||| |  | ||||||||| ||||||    
T  10112516 ttcattgaaacttctcagacaacaccaacaattgaaaccccaagaacatacaaacatatataatcatatatcaagtgattagaaacatgtttggacaata 10112417  T
Q  438 atcact 443  Q
    ||||||    
T  10112416 atcact 10112411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 348 - 468
Target Start/End: Original strand, 26132604 - 26132723
Alignment:
Q  348 cttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaataatcactcatc 447  Q
    |||||||||| |||||||| |||||||||| || |||||  |||||||||||||||| ||| || |||||||| |||||||| ||||||||||||||| |    
T  26132604 cttcacaaacaacaacaacaattcaaatcc-aacaacataaaaacatatataatcatttatcaaatgaatttagacatgtttcaacaataatcactcacc 26132702  T
Q  448 aattcatgacttacacttaat 468  Q
    ||||||||| |||||||||||    
T  26132703 aattcatgatttacacttaat 26132723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 340 - 468
Target Start/End: Original strand, 13456885 - 13457013
Alignment:
Q  340 cattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaataat 439  Q
    ||||||| |||||||||| || |||   ||||||| ||||| ||||| ||| | ||| ||||||| ||| ||||||||||| |||||||  |||||||||    
T  13456885 cattcaaacttcacaaacaaccacacaaattcaaaccccaacaacatacaagcttatgtaatcatttatgaagtgaatttaaacatgttccaacaataat 13456984  T
Q  440 cactcatcaattcatgacttacacttaat 468  Q
    |||||||||||| |||  |||||||||||    
T  13456985 cactcatcaattgatggtttacacttaat 13457013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 465
Target Start/End: Complemental strand, 23595810 - 23595671
Alignment:
Q  328 ttttatcaatttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatata--aagtgaatttacacat 425  Q
    |||| ||| |||| ||||| |||||||||  |||||||| ||||||| ||||| ||||| ||||||||||||||||||||||  || |||||||| || |    
T  23595810 ttttctcattttctttcaaacttcacaaaaaacaacaacaattcaaaccccaacaacatacaaacatatataatcatatatatcaactgaatttaaactt 23595711  T
Q  426 gtttgaacaataatcactcatcaattcatgacttacactt 465  Q
     |||| | | ||||||||||  ||||||||  ||||||||    
T  23595710 ttttggaaattaatcactcacaaattcatggattacactt 23595671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 454
Target Start/End: Original strand, 17364081 - 17364198
Alignment:
Q  337 tttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaat 436  Q
    |||||||||| |||||||||| || |||   | ||||| ||||  ||||| |||||||| |||| ||| ||| |||||||||||  ||||||| ||||||    
T  17364081 tttcattcaaacttcacaaacaaccacacaaagtcaaaccccatcaacatgcaaacataaataaacatttattaagtgaatttaagcatgtttcaacaat 17364180  T
Q  437 aatcactcatcaattcat 454  Q
    ||||||||| ||||||||    
T  17364181 aatcactcaccaattcat 17364198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 415
Target Start/End: Original strand, 37279976 - 37280066
Alignment:
Q  328 ttttatcaatttcattcaatcttcacaaactacaacaacga---ttcaaatcccaataacattcaaacatatataatcatatataaagtga 415  Q
    |||| ||| |||||||||| |||||||||| |||||||| |   |||||| ||||| ||||| ||||||||||||||||||||| ||||||    
T  37279976 ttttctcattttcattcaaacttcacaaacaacaacaacaacaattcaaaccccaacaacatacaaacatatataatcatatatcaagtga 37280066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 468
Target Start/End: Original strand, 26867852 - 26867910
Alignment:
Q  410 aagtgaatttacacatgtttgaacaataatcactcatcaattcatgacttacacttaat 468  Q
    ||||||||||| || ||||  |||||||||||||||||||||||||  |||||||||||    
T  26867852 aagtgaatttaaacttgttccaacaataatcactcatcaattcatggtttacacttaat 26867910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 328 - 468
Target Start/End: Original strand, 3515 - 3655
Alignment:
Q  328 ttttatcaatttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgt 427  Q
    |||| ||| |||||||||| |||||||||| |  ||| | ||||||| ||||| ||||| ||| ||||||||||||| ||| ||||||||||  ||||||    
T  3515 ttttctcattttcattcaaacttcacaaaccagcacaccaattcaaaccccaacaacatacaagcatatataatcatttatgaagtgaatttgaacatgt 3614  T
Q  428 ttgaacaataatcactcatcaattcatgacttacacttaat 468  Q
    |  |||||||||||||||||||||||||  |||||||||||    
T  3615 tccaacaataatcactcatcaattcatggattacacttaat 3655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 328 - 468
Target Start/End: Original strand, 20148517 - 20148657
Alignment:
Q  328 ttttatcaatttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgt 427  Q
    |||| ||| |||||||||| |||||| ||| || ||| | ||||||||||||| | ||| |||||||||||| |||| ||| ||||||||||| ||||||    
T  20148517 ttttctcattttcattcaaacttcactaacaaccacaccaattcaaatcccaacagcatacaaacatatatactcatttatgaagtgaatttaaacatgt 20148616  T
Q  428 ttgaacaataatcactcatcaattcatgacttacacttaat 468  Q
    |  |||||||||||||| ||||||||||  |||||||||||    
T  20148617 tccaacaataatcactcgtcaattcatggtttacacttaat 20148657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 368 - 465
Target Start/End: Original strand, 16175156 - 16175253
Alignment:
Q  368 attcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaataatcactcatcaattcatgacttacactt 465  Q
    ||||||| ||||| ||||| ||||||| ||||||||| ||| ||||||| ||| |||||||  |||||||||||||||||||||||||  ||||||||    
T  16175156 attcaaaccccaacaacatacaaacatttataatcatttatgaagtgaaattaaacatgttccaacaataatcactcatcaattcatggtttacactt 16175253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 465
Target Start/End: Original strand, 16196543 - 16196680
Alignment:
Q  328 ttttatcaatttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgt 427  Q
    |||| ||| |||||||||| |||||||||| || |||  |||||||| ||||| |||||  |||| ||||||||||| ||| ||||||||||| | ||||    
T  16196543 ttttctcattttcattcaaacttcacaaacaaccacactgattcaaaccccaacaacatataaacttatataatcatttatgaagtgaatttaaatatgt 16196642  T
Q  428 ttgaacaataatcactcatcaattcatgacttacactt 465  Q
    |   |||||||| |||||||||||||||  ||||||||    
T  16196643 tcctacaataattactcatcaattcatggtttacactt 16196680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 341 - 468
Target Start/End: Original strand, 16094651 - 16094778
Alignment:
Q  341 attcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaataatc 440  Q
    |||||| |||||||||| || ||| | ||||||| ||||  ||||| ||||||| ||||| ||| ||| ||||||||||  |||||||| || | |||||    
T  16094651 attcaaacttcacaaacaactacaccaattcaaaccccaccaacatacaaacatgtataaccatttatgaagtgaatttgaacatgtttcaatagtaatc 16094750  T
Q  441 actcatcaattcatgacttacacttaat 468  Q
    |||||||||||||||  |||||||||||    
T  16094751 actcatcaattcatggtttacacttaat 16094778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 454
Target Start/End: Original strand, 23099800 - 23099916
Alignment:
Q  337 tttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaat 436  Q
    ||||||| || |||||||||| || ||| | ||||||| ||||  |||||  |||||| || || ||| ||| ||||||||||  |||||||| ||||||    
T  23099800 tttcatttaaacttcacaaacaaccacaccaattcaaaccccatcaacatataaacatgtaaaa-catttatgaagtgaatttgaacatgtttcaacaat 23099898  T
Q  437 aatcactcatcaattcat 454  Q
    ||||||| ||||||||||    
T  23099899 aatcacttatcaattcat 23099916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 464
Target Start/End: Complemental strand, 8327324 - 8327270
Alignment:
Q  410 aagtgaatttacacatgtttgaacaataatcactcatcaattcatgacttacact 464  Q
    ||||||||| | |||||||| ||||||||||||||||| |||| ||| |||||||    
T  8327324 aagtgaattcaaacatgtttcaacaataatcactcatcgattcgtgatttacact 8327270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 454
Target Start/End: Complemental strand, 17161370 - 17161329
Alignment:
Q  413 tgaatttacacatgtttgaacaataatcactcatcaattcat 454  Q
    |||||||| |||||||  ||||||||||||||||||||||||    
T  17161370 tgaatttaaacatgttccaacaataatcactcatcaattcat 17161329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 337 - 464
Target Start/End: Original strand, 15538955 - 15539082
Alignment:
Q  337 tttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaat 436  Q
    |||||||||| |||||||||| |  ||| | ||||||| ||||  ||||| ||||||||   || ||| ||||||||||||||| |||||||| ||||||    
T  15538955 tttcattcaaacttcacaaacaatcacaccaattcaaaacccatcaacatacaaacataatcaaacatttataaagtgaatttaaacatgtttcaacaat 15539054  T
Q  437 aatcactcatcaattcatgacttacact 464  Q
    |||||||||||||||||||| |||||||    
T  15539055 aatcactcatcaattcatgatttacact 15539082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 337 - 464
Target Start/End: Complemental strand, 19632159 - 19632032
Alignment:
Q  337 tttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaat 436  Q
    |||||||||| ||||| |||| || ||| | ||||||| ||||  ||||| |||||||  |||| ||| ||| |||||||||||  ||||||| ||||||    
T  19632159 tttcattcaaacttcaaaaacaaccacaccaattcaaaccccatcaacatacaaacatgcataaacatttatgaagtgaatttaagcatgtttcaacaat 19632060  T
Q  437 aatcactcatcaattcatgacttacact 464  Q
    |||||||||||||||||||| |||||||    
T  19632059 aatcactcatcaattcatgatttacact 19632032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 337 - 464
Target Start/End: Complemental strand, 19660052 - 19659925
Alignment:
Q  337 tttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaat 436  Q
    |||||||||| ||||| ||||  | ||| | ||||||| ||||  ||||| ||||||  ||||  ||| ||| |||||||||||  ||||||| ||||||    
T  19660052 tttcattcaaacttcataaacatccacaccaattcaaaccccatcaacatacaaacaggtatagacatttatgaagtgaatttaagcatgtttcaacaat 19659953  T
Q  437 aatcactcatcaattcatgacttacact 464  Q
    |||||||||||||||||||| |||||||    
T  19659952 aatcactcatcaattcatgatttacact 19659925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 342 - 454
Target Start/End: Original strand, 19614326 - 19614438
Alignment:
Q  342 ttcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaataatca 441  Q
    ||||| |||||||||| |  ||| | ||||||| ||||  ||||| ||||||| ||||| ||| ||| ||||||||||| |||||||| |||||||||||    
T  19614326 ttcaaacttcacaaacaatcacatcaattcaaaccccatcaacatacaaacatgtataaacatttatgaagtgaatttaaacatgtttcaacaataatca 19614425  T
Q  442 ctcatcaattcat 454  Q
    || | ||||||||    
T  19614426 cttaccaattcat 19614438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 464
Target Start/End: Complemental strand, 2547317 - 2547190
Alignment:
Q  337 tttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaat 436  Q
    |||||||||| |||||||||| || ||| | ||||||| ||||  ||||| |||||||| | ||  ||  || ||||||||||| |||||||| |||||     
T  2547317 tttcattcaaacttcacaaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaac 2547218  T
Q  437 aatcactcatcaattcatgacttacact 464  Q
    |||||||||  |||||| || |||||||    
T  2547217 aatcactcacaaattcacgatttacact 2547190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 467
Target Start/End: Complemental strand, 40354545 - 40354406
Alignment:
Q  328 ttttatcaatttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgt 427  Q
    |||| ||| ||||||| || |||||||||| || ||| | ||||||| ||||  |||||  ||||||| |||| |||  |  ||||||||||| ||||||    
T  40354545 ttttctcattttcatttaaacttcacaaacaaccacaccaattcaaaccccatcaacatataaacataaataaacattcaagaagtgaatttaaacatgt 40354446  T
Q  428 ttgaacaataatcactcatcaattcatgacttacacttaa 467  Q
    |  ||||  |||||||||||||||||||  ||||||||||    
T  40354445 tccaacataaatcactcatcaattcatggtttacacttaa 40354406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 444
Target Start/End: Complemental strand, 14305606 - 14305496
Alignment:
Q  334 caatttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaac 433  Q
    ||||||||| ||| |||| ||||| |||||||| |||||||   ||| ||||| ||||||||||||||||| ||  |||||| |  | ||| |||||| |    
T  14305606 caatttcatccaaacttctcaaacaacaacaacaattcaaacttcaacaacatacaaacatatataatcatttaccaagtgattagaaacaggtttgacc 14305507  T
Q  434 aataatcactc 444  Q
    |||||||||||    
T  14305506 aataatcactc 14305496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 338 - 464
Target Start/End: Original strand, 23299570 - 23299696
Alignment:
Q  338 ttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaata 437  Q
    ||||||||| ||||| |||| || ||| | |||||||  |||  ||||| |||||||| |||| ||| ||| ||||||||||| |||||||| |||||||    
T  23299570 ttcattcaaacttcaaaaacaaccacaccaattcaaactccatcaacatacaaacataaataaacatttatgaagtgaatttaaacatgtttcaacaata 23299669  T
Q  438 atcactcatcaattcatgacttacact 464  Q
    ||||||||||||||||||| |||||||    
T  23299670 atcactcatcaattcatgatttacact 23299696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 337 - 464
Target Start/End: Original strand, 14354211 - 14354338
Alignment:
Q  337 tttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaat 436  Q
    |||||||||| |||||||||| || |||   ||||||| ||||  ||||  ||||||||||||| ||| ||||||||||||| | |||||||| |||||     
T  14354211 tttcattcaaacttcacaaacaaccacacaaattcaaaccccatcaacagacaaacatatataaacatttataaagtgaattcaaacatgtttcaacaag 14354310  T
Q  437 aatcactcatcaattcatgacttacact 464  Q
    |||||||||| ||||||||| |||||||    
T  14354311 aatcactcattaattcatgatttacact 14354338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 22545764 - 22545831
Alignment:
Q  334 caatttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataat 401  Q
    ||||||||| ||| |||||||||| |||||||| ||||||| ||||||||||| ||||||||||||||    
T  22545764 caatttcatccaaacttcacaaacaacaacaacaattcaaaccccaataacatacaaacatatataat 22545831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 463
Target Start/End: Complemental strand, 19977489 - 19977394
Alignment:
Q  368 attcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaataatcactcatcaattcatgacttacac 463  Q
    ||||||| |||| |||||| ||||| | |||||  || ||| ||||||||||| |||||||| ||||| ||| ||||| |||||||||||||||||    
T  19977489 attcaaaccccattaacatacaaacgtgtataaaaatttatgaagtgaatttaaacatgtttcaacaacaatgactcaccaattcatgacttacac 19977394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 454
Target Start/End: Original strand, 12487701 - 12487773
Alignment:
Q  382 aacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaataatcactcatcaattcat 454  Q
    ||||| ||||||| ||||| ||| |||  |||||||||| |||| ||| ||||||||||||||||||||||||    
T  12487701 aacatacaaacatgtataaacatttatgtagtgaatttaaacatatttcaacaataatcactcatcaattcat 12487773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 467
Target Start/End: Complemental strand, 12463895 - 12463756
Alignment:
Q  328 ttttatcaatttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgt 427  Q
    |||| ||| |||||||||| |||||||||| || ||| | ||||||   |||  ||||| ||||||| || ||| || ||| ||||| ||||| ||||||    
T  12463895 ttttctcattttcattcaaacttcacaaaccaccacaccaattcaacatccatcaacatacaaacatgtaaaataatttatgaagtgcatttaaacatgt 12463796  T
Q  428 ttgaacaataatcactcatcaattcatgacttacacttaa 467  Q
    |  || |||||||| |||||||||||||  ||||||||||    
T  12463795 tccaagaataatcattcatcaattcatggtttacacttaa 12463756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 454
Target Start/End: Complemental strand, 23294478 - 23294361
Alignment:
Q  337 tttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaat 436  Q
    |||||||||| |||||||||| |  |||   ||||||| || |  ||||| ||||||| | ||| ||| ||| ||||||||||| |||| ||| ||||||    
T  23294478 tttcattcaaacttcacaaacaatcacactaattcaaaaccaatcaacatacaaacatgtgtaaacatctatgaagtgaatttaaacatattttaacaat 23294379  T
Q  437 aatcactcatcaattcat 454  Q
    ||||||| ||||||||||    
T  23294378 aatcacttatcaattcat 23294361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 455
Target Start/End: Original strand, 23350245 - 23350290
Alignment:
Q  410 aagtgaatttacacatgtttgaacaataatcactcatcaattcatg 455  Q
    ||||||||||  |||||||| |||||||||||||||||| ||||||    
T  23350245 aagtgaatttgaacatgtttcaacaataatcactcatcatttcatg 23350290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 368 - 467
Target Start/End: Complemental strand, 30419 - 30320
Alignment:
Q  368 attcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaataatcactcatcaattcatgacttacacttaa 467  Q
    ||||||| ||||| ||||| | ||||||||||||||| ||| ||||||||||| |||||||   |||| |||||||||||||||||||| ||||||||||    
T  30419 attcaaaccccaacaacataccaacatatataatcatttatgaagtgaatttaaacatgttccgacaacaatcactcatcaattcatgatttacacttaa 30320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 349 - 468
Target Start/End: Complemental strand, 106154 - 106035
Alignment:
Q  349 ttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaataatcactcatca 448  Q
    |||||| || ||| |||| |||||||   ||| ||||| |||| |||||||||||||||| ||||||||||| |||||||||||||| |||||||||  |    
T  106154 ttcacagacaacaccaacaattcaaacttcaacaacatacaaatatatataatcatatatcaagtgaatttagacatgtttgaacaacaatcactcacaa 106055  T
Q  449 attcatgacttacacttaat 468  Q
    |||||||   ||||||||||    
T  106054 attcatggtctacacttaat 106035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 455
Target Start/End: Original strand, 154904 - 155022
Alignment:
Q  337 tttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaat 436  Q
    |||||||||| ||||| |||| |  ||| ||||| ||| | || |||||| ||||||| ||||| ||| ||| ||||||||||| |||||||| ||| ||    
T  154904 tttcattcaaacttcaaaaacaatcacaccgatttaaacctcattaacatacaaacatgtataaacatttatgaagtgaatttaaacatgtttcaaccat 155003  T
Q  437 aatcactcatcaattcatg 455  Q
    |||||||||||||||||||    
T  155004 aatcactcatcaattcatg 155022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 328 - 468
Target Start/End: Original strand, 25263175 - 25263316
Alignment:
Q  328 ttttatcaatttcattcaatcttcacaaactacaacaacgattcaaatccc-aataacattcaaacatatataatcatatataaagtgaatttacacatg 426  Q
    |||| ||| ||| |||||| |||||||||| || ||| |  |||||| ||| || ||||| ||||||||||||||||| ||| ||||||||||| |||||    
T  25263175 ttttctcatttttattcaaacttcacaaacaaccacaccacttcaaacccccaacaacatacaaacatatataatcatttatgaagtgaatttaaacatg 25263274  T
Q  427 tttgaacaataatcactcatcaattcatgacttacacttaat 468  Q
    ||  |||||||||||||||||| || | |  |||||||||||    
T  25263275 ttccaacaataatcactcatcatttaagggtttacacttaat 25263316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 467
Target Start/End: Original strand, 21695078 - 21695135
Alignment:
Q  410 aagtgaatttacacatgtttgaacaataatcactcatcaattcatgacttacacttaa 467  Q
    ||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||    
T  21695078 aagtgaatttaaacatgtttcaacaataatcactcatcaattgatgatttacacttaa 21695135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 464
Target Start/End: Original strand, 1623 - 1749
Alignment:
Q  338 ttcattcaatcttcacaaactacaacaacgattcaaatcccaataacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaata 437  Q
    ||||||||| ||||| |||| || ||| | ||||||||||||  ||||| |||||| ||| || ||| ||| ||||||||||| ||| |||| ||||| |    
T  1623 ttcattcaaacttcataaacaaccacaccaattcaaatcccataaacatacaaacacatacaaacatttatgaagtgaatttaaacaagtttcaacaaca 1722  T
Q  438 atcactcatcaattcatgacttacact 464  Q
    ||||||||  ||||||| |||||||||    
T  1723 atcactcacaaattcataacttacact 1749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 468
Target Start/End: Original strand, 51807 - 51865
Alignment:
Q  410 aagtgaatttacacatgtttgaacaataatcactcatcaattcatgacttacacttaat 468  Q
    ||||||| ||| || ||||  |||||||||||||||||||||||||  |||||||||||    
T  51807 aagtgaaattaaacttgttccaacaataatcactcatcaattcatggtttacacttaat 51865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 464
Target Start/End: Original strand, 28774207 - 28774261
Alignment:
Q  410 aagtgaatttacacatgtttgaacaataatcactcatcaattcatgacttacact 464  Q
    ||||||||| | |||||||| ||||| |||||| ||||||||||||| |||||||    
T  28774207 aagtgaattcaaacatgtttcaacaacaatcacacatcaattcatgatttacact 28774261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 455
Target Start/End: Original strand, 1847 - 1920
Alignment:
Q  382 aacattcaaacatatataatcatatataaagtgaatttacacatgtttgaacaataatcactcatcaattcatg 455  Q
    ||||| ||||||| ||||| ||| ||| ||||||||||| ||| |||| |||||||| ||||| | ||||||||    
T  1847 aacatacaaacatgtataaacatttatgaagtgaatttaaacacgttttaacaataaccactctttaattcatg 1920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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