View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5248-Insertion-6 (Length: 443)

Name: NF5248-Insertion-6
Description: NF5248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5248-Insertion-6
NF5248-Insertion-6
[»] chr4 (1 HSPs)
chr4 (9-443)||(52513187-52513621)


Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 9 - 443
Target Start/End: Original strand, 52513187 - 52513621
Alignment:
Q  9 ccaggatacagaatttacgtccttgcgaattttattaaagaaatctttgtccttacattatcatcaacttactagtcttaatcattcattgtttttgtta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52513187 ccaggatacagaatttacgtccttgcgaattttattaaagaaatctttgtccttacattatcatcaacttactagtcttaatcattcattgtttttgtta 52513286  T
Q  109 ttgcaatgcaaataccctcttttcctcctaaagcatctccgtctggttcttcttccaagagtcctaagacattgccacctccacctcctaatgaaggtta 208  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52513287 ttgcaatgcaaataccctcttttcctcctaaagtatctccgtctggttcttcttccaagagtcctaagacattgccacctccacctcctaatgaaggtta 52513386  T
Q  209 gcacattatttgcttagtaggttttattctgtggacaaagctttcaatatctgtactttttggaatgttctgaacaattttcatcataattaaatttann 308  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  52513387 gcacattatttgcttagtaggttttattctgtggacatagctttcaatatctgtactttttggaatgttctgaacaattttcatcataattaaatttatt 52513486  T
Q  309 nnnnnaatatcttcagattgtttatcaaccgcttgcaccgagccttatgtaacttctcctcttggagcaccttgcagatgtgtttggcctttgcgagtcg 408  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52513487 tttttaatatcttcagattgtttatcaaccgcttgcaccgagccttatgtaacttctcctcttggagcaccttgcagatgtgtttggcctttgcgagtcg 52513586  T
Q  409 gtctccgccttagcatttctctttataccttcttc 443  Q
    |||||||||||||||||||||||||||||||||||    
T  52513587 gtctccgccttagcatttctctttataccttcttc 52513621  T

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