View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5248_high_3 (Length: 483)
Name: NF5248_high_3
Description: NF5248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5248_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 216 - 478
Target Start/End: Original strand, 53053348 - 53053610
Alignment:
| Q |
216 |
gcataagctagctcaagttagtgccatattaactaactataaataactgtgttgcaaacaacaattgtagcaacaaaacagaacattcattagcaatgga |
315 |
Q |
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| T |
53053348 |
gcataagctagctcaagttagtgccatattaactaactataaataactgtgttgcaaacaacaattgtagcaacaaaacagaacattcattagcaatgga |
53053447 |
T |
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| Q |
316 |
agctccaagctttgtcttcttgtcattgcttcttctcctcacagctactacaagctcagctcaactcactcgtggtttctataacaatgtatgccccaat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53053448 |
agctccaagctttgtcttcttgtcattgcttcttctcctcacagctactacaagctcagctcaactcactcgtggtttctataacaatgtatgccccaat |
53053547 |
T |
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| Q |
416 |
gtcgaacaattggttcgttctgccgtgaatcagaagtttcaacaaacatttgtctctgctcct |
478 |
Q |
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| T |
53053548 |
gtcgaacaattggttcgttctgccgtgaatcagaagtttcaacaaacatttgtcactgctcct |
53053610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 3 - 156
Target Start/End: Original strand, 53053135 - 53053288
Alignment:
| Q |
3 |
ccccaatcatcctttagtccataacataacaatattacacatactcttaaataaaaattatatcactctagccagactgtccatgtaacagacttttgtt |
102 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
53053135 |
ccccaatcatcctttagtccataacatagcaatatgacacatactcttaaataaaaattatatcactctagccagactgtccatgtaacagactttcgtt |
53053234 |
T |
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| Q |
103 |
ttgattctcatcaatcaattattcttcaatcatgccccttcaaaagtgtaaccc |
156 |
Q |
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| T |
53053235 |
ttgattctcatcaatcaattattctttaatcatgccccttcaaaagtgtaaccc |
53053288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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