View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5248_low_1 (Length: 640)
Name: NF5248_low_1
Description: NF5248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5248_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 307 - 632
Target Start/End: Complemental strand, 9489186 - 9488861
Alignment:
| Q |
307 |
gttacaaaagacacaaaataaactgtcggaaaacataaatgctaaccgcgggaaataatcatcctctaggagttagagaatctgttttctcacccttatt |
406 |
Q |
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| T |
9489186 |
gttacaaaagacacaaaataaactgtcggaaaacataaatgctaaccgctggaaataatcaacctctaggagttagagaatctgttttctcacccttatt |
9489087 |
T |
|
| Q |
407 |
ctatttaaaacgattcataaacacacaaatacattgtctattgaactaactaacaatactcatcgcaaaagcttcactttgtcctgaaggtgaaagaaac |
506 |
Q |
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| T |
9489086 |
ctatttaaaacgattcctaaacacacaaatacattgtctattgaacttactaacaatactcatcgcaaaagcttcactttgtcctgaaggtgaaagaaac |
9488987 |
T |
|
| Q |
507 |
acattgtagaaaaaatgaatgctcctagatcaaatgttctattttttggcttcttcgaactcgcggttctgaagctggtcattgagttggtttacccaag |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9488986 |
acattgtagaaaaaatgaatgctcctagatcaaatgttctattttttggcttcttcgaactcgcggttctgaagctggtcattgggttggtttacccaag |
9488887 |
T |
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| Q |
607 |
cttttgtctccttagatttctctgct |
632 |
Q |
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|||||||||||||||||||||||||| |
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| T |
9488886 |
cttttgtctccttagatttctctgct |
9488861 |
T |
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