View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5248_low_2 (Length: 536)
Name: NF5248_low_2
Description: NF5248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5248_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 30 - 489
Target Start/End: Complemental strand, 52324935 - 52324476
Alignment:
| Q |
30 |
ggttgctttcagctaaaatgattatgtttatgctgcgggcattggtatttatgggtatatgtggggaagaaaagcggtaacatcaaaacgccaatgaaaa |
129 |
Q |
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| T |
52324935 |
ggttgctttcagcgaaaatgattatgtttatgctgcgggcattggtatttatgggtatatgtggggaagaaaagcggtaacatcaaaacaccaatgaaaa |
52324836 |
T |
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| Q |
130 |
agcttatttcctaaccaatcttctccttcacagtaaacatctcatctcacacagttaagagatggctgcagatgtaggatgctgtggaactaaattctgg |
229 |
Q |
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| T |
52324835 |
accttatttcctaaccaatcttctccttcacagtaaacatctcatctcacacagttaagagatggctgcagatgtaggatgctgtggaactaaattctgg |
52324736 |
T |
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| Q |
230 |
ctatacatattgatgatcataggattagtatgcttcgctggtcttatggctggtctcactcttggactcatgtctttaggtctcgtcgaccttgaagttc |
329 |
Q |
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| T |
52324735 |
ctatacatattgatgatcataggattagtatgcttcgctggtcttatggctggtctcactcttggactcatgtctttaggtctcgtcgaccttgaagttc |
52324636 |
T |
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| Q |
330 |
tcatcaaatctggtcgccctcaacatcgcatccatgccgccaaaattttcccagttgttaagaatcagcatcttttgctttgtactcttttgatcggaaa |
429 |
Q |
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| T |
52324635 |
tcatcaaatctggtcgccctcaacatcgcatccatgccgccaaaattttcccagttgttaagaatcagcatcttttgctttgtactcttttgatcggaaa |
52324536 |
T |
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| Q |
430 |
ttccttggccatggaggtaacagttactcttttaatcactatcgttacttaattctttat |
489 |
Q |
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| T |
52324535 |
ttccttggccatggaggtaacagttattcttttaatcactatcgttacttaattctttat |
52324476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 330
Target Start/End: Original strand, 48667347 - 48667420
Alignment:
| Q |
257 |
gtatgcttcgctggtcttatggctggtctcactcttggactcatgtctttaggtctcgtcgaccttgaagttct |
330 |
Q |
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|||||||| |||||| | ||| | |||||||||||||| ||||||||| | ||||||||||||||||| |||| |
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| T |
48667347 |
gtatgctttgctggtatcatgtccggtctcactcttggtctcatgtctctcagtctcgtcgaccttgaaattct |
48667420 |
T |
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