View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5248_low_4 (Length: 438)
Name: NF5248_low_4
Description: NF5248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5248_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 999832 - 1000235
Alignment:
| Q |
18 |
atatggtacattgagttttctggagaagaaaagagagagaatgcatggaagagggagaaaccttgtcaccatgtttttcgacttgatttaggaacattat |
117 |
Q |
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| T |
999832 |
atatggtacattgagttttctggagaagaaaagagagagaatgcatggaagagggagaaaccttgtcaccatgtttttcgacttgatttaggaacattat |
999931 |
T |
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| Q |
118 |
aagaccgttatgacagttacatgtgtaggcgtagcccccacattttagattgctttttttggattannnnnnnnnnaataaaatgtagctaccgtacttt |
217 |
Q |
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| T |
999932 |
aagaccgttatgacagttacatgtgtaggcgtagcccccacatcttagattgctttttttggattattttttttttaataaaatgtagctaccgtacttt |
1000031 |
T |
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| Q |
218 |
atataatttttcttttaaattaaaatatcactgctcacaactaggggtatgcatggttgaaccgaaacaaactgaaccatatttattcacctcaatgtaa |
317 |
Q |
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| T |
1000032 |
atataatttttcttttaaattaaaatatcactgctcacaactaggggtatgcatggttgaaccgaaacaaactgaaccatatttattcacctcaatgtaa |
1000131 |
T |
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| Q |
318 |
ttcagacatctcacaagcaacattatttctttcctactatc-nnnnnnnnnnnnnnnccctctaagaacgaccaatgtagagttacaaaagaaattgtaa |
416 |
Q |
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| T |
1000132 |
ttcagacatctcacaagcaacattatttctttcctactatctttatagtttttttttccctctaagaacgaccaaagtagagttacaaaagaaattgtaa |
1000231 |
T |
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| Q |
417 |
atca |
420 |
Q |
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|||| |
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| T |
1000232 |
atca |
1000235 |
T |
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