View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5248_low_6 (Length: 302)
Name: NF5248_low_6
Description: NF5248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5248_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 33 - 277
Target Start/End: Complemental strand, 34789482 - 34789226
Alignment:
| Q |
33 |
aatgatggcaatagaactggaccatataagggtaaaataaaaagtcaatggacaaaaatgacaaatcagagtcaaccgtgattgtagagtctagagtaaa |
132 |
Q |
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| T |
34789482 |
aatgatggcaatagaactggaccatataagggtaaaataaaaagtcaatggacaaaaatgacaaatcagagtcaaccgtgattgtagagtctagagtaaa |
34789383 |
T |
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| Q |
133 |
aaagtagtacagaaacatatatcttaaatacccatggcaatagaactcaaccagaaaaggt------------nnnnnnnnngtcaacctctgaatcaaa |
220 |
Q |
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| T |
34789382 |
aaagtagtacagaaacatatatcttaaatacccatggcaatagaactcaaccagaaaaggtaaaaaaaaaaaaaaaaaacaagtcaacttctgaatcaaa |
34789283 |
T |
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| Q |
221 |
tgcgcctgaagaatcaagagcaaagaagttgtgcagaaagatatatcttacattcaa |
277 |
Q |
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| T |
34789282 |
tgcgcctgaagaatcaagagcaaagaagttgtgcagaaagatatatcttacattcaa |
34789226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 34789179 - 34789125
Alignment:
| Q |
226 |
ctgaagaatcaagagcaaagaagttgtgcagaaagatatatcttacattcaagtc |
280 |
Q |
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| T |
34789179 |
ctgaagaatcatgagcagagatgttgcacagaaacatatatcttacattcaagtc |
34789125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 2289501 - 2289767
Alignment:
| Q |
22 |
ttaatttagtaaatgatggcaatagaactggaccatataagggtaaaataaaaagtcaatggacaaaaatgacaaatcagagtcaaccgtgattgtagag |
121 |
Q |
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| T |
2289501 |
ttaatttagtaaaagatggcaatagagctggaccagaaaaggttaaactataaagtcaatggacaaagataagaaatcagagtcaaatgtgattgtagaa |
2289600 |
T |
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| Q |
122 |
tctagagtaaaaaagtagtacagaaacatatatcttaaataccc---atggcaatagaactcaaccagaaaaggt------nnnnnnnnngtcaacctct |
212 |
Q |
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| T |
2289601 |
tctagagtaaaaaagtagtacagaaa-atatatcttgaatacccgtgatggcaatagaactcaaccagaaaaggtaaaaaaaaacagcaagtcaatctct |
2289699 |
T |
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| Q |
213 |
gaatcaaatgcgcctgaagaatcaagagcaaagaagttgtgcagaaagatatatcttacattcaagtctaaaac |
286 |
Q |
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| T |
2289700 |
gaatcaaatgcggctgaagaatcaagagcaaagaagttgtgcagga------atcttacattcaagtctaaaac |
2289767 |
T |
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