View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5248_low_7 (Length: 255)
Name: NF5248_low_7
Description: NF5248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5248_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 51455566 - 51455331
Alignment:
| Q |
1 |
caaattttctccgactatacaggaatacctcgtctcttggcttctctttccttctcaatcatttgttcttcatccaaccgtcttaaatgtggaagaagtc |
100 |
Q |
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| T |
51455566 |
caaattttctccgactatacaggaatacctcgtctcttggcttctctttccttctcaatcatttgttctgcatccaaccgtcttaaatgtggaagaagtc |
51455467 |
T |
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| Q |
101 |
ctttcagcagatactcagagaactcaacctcctcctcgttgatggtttcagccttacgcttcatttcctatagtaaaccaaatggatagatttcaaatat |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51455466 |
ctttcagcagatacttagagaactcaacctcctcctcgttgatggtttcagccttacgcttcatttcctatagtaaaccaaatggatagatttcaaatat |
51455367 |
T |
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| Q |
201 |
agaatacagaaaaatcagaagaatagttaatcgtgg |
236 |
Q |
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| T |
51455366 |
agaatacagaaaaatcagaagaatagttaatcgtgg |
51455331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 51480038 - 51479949
Alignment:
| Q |
26 |
tacctcgtctcttggcttctctttccttctcaatcatttgttcttcatccaaccgtcttaaatgtggaagaagtcctttcagcagatact |
115 |
Q |
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| T |
51480038 |
taccttgtctctttgcttctatctccttctcgaccatttgttcttcatccaatcgtcttaaatatggaagaagttctttcaccatatact |
51479949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 30207301 - 30207408
Alignment:
| Q |
24 |
aatacctcgtctcttggcttctctttccttctcaatcatttgttcttcatccaaccgtcttaaatgtggaagaagtcctttcagcagatactcagagaac |
123 |
Q |
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| T |
30207301 |
aataccttgtctctttgcttctatctccttctcggccatttgttcttcatccaattgtcttaaatacggaagaagtattttcaacatatacttggagagc |
30207400 |
T |
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| Q |
124 |
tcaacctc |
131 |
Q |
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|||||||| |
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| T |
30207401 |
tcaacctc |
30207408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 51497078 - 51496994
Alignment:
| Q |
25 |
atacctcgtctcttggcttctctttccttctcaatcatttgttcttcatccaaccgtcttaaatgtggaagaagtcctttcagca |
109 |
Q |
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| T |
51497078 |
ataccttgtatctttgcttctatctccttctcagccatttgctcttcatccaaacgacttaaatatggaaaaagtactttcagca |
51496994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 43160484 - 43160261
Alignment:
| Q |
8 |
tctccgactatacaggaatacctcgtctcttggcttctctttccttctcaatcatttgttcttcatccaaccgtcttaaatgtggaagaagtcctttcag |
107 |
Q |
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|||| ||||||| |||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43160484 |
tctctgactataaaggaataccttgtatcttggcttctctttccttctaaatcatttgttcttcatccaaccctcttaaatgtggaagaagtcctttcag |
43160385 |
T |
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| Q |
108 |
cagatactcagagaactcaacctcctcctcgttgatggtttcagccttacgcttcatttcctatagtaaaccaaatggatagatttcaaatatagaatac |
207 |
Q |
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| || || ||||||||||| ||||| | | || ||||||| ||||| ||||||||||||||||||||||| ||||||| |||||||||||| ||||| |
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| T |
43160384 |
aatattcttcgagaactcaacttcctcattgctgttggtttcgaccttatgcttcatttcctatagtaaaccagatggatacatttcaaatatacaatac |
43160285 |
T |
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| Q |
208 |
agaaaaatcagaagaatagttaat |
231 |
Q |
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| T |
43160284 |
agaaaaatcataagaatagttaat |
43160261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 27396047 - 27395958
Alignment:
| Q |
36 |
cttggcttctctttccttctcaatcatttgttcttcatccaaccgtcttaaatgtggaagaagtcctttcagcagatactcagagaactc |
125 |
Q |
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|||||||||| | |||||||| ||||||||||| |||||| ||| |||||||||||||||| |||| |||| ||||| |||||||| |
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| T |
27396047 |
cttggcttctatctccttctcggccatttgttcttgatccaatcgtattaaatgtggaagaagagctttgagcatatacttggagaactc |
27395958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 18079673 - 18079591
Alignment:
| Q |
32 |
gtctcttggcttctctttccttctcaatcatttgttcttcatccaaccgtcttaaatgtggaagaagtcctttcagcagatact |
115 |
Q |
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| T |
18079673 |
gtctctttgctgctatatccttctcgaccatttgttcttcatccaatcgtcttaaatatggaagaagt-ctttcagcatatact |
18079591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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