View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5248_low_8 (Length: 237)
Name: NF5248_low_8
Description: NF5248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5248_low_8 |
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| [»] chr1 (4 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 51455828 - 51455592
Alignment:
| Q |
1 |
aggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgtgaagtcaacagctatatagcatta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
51455828 |
aggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttgtcactacaaaaagtgtgaagtcaacaactatatagcatta |
51455729 |
T |
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| Q |
101 |
gaataagtnnnnnnngcattgattaatataccaaatcagtccttaccagaacacacgctcatctttagaataatccgccggttttatatttagctttgag |
200 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51455728 |
gaataagtaaaaaaagcattgattaatataccaaatcagtctttaccagaacacacgctcatctttagaataatccgccggttttatatttagctttgag |
51455629 |
T |
|
| Q |
201 |
agtgagagccctgtaattcacatcccaaaatcaaatt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
51455628 |
agtgagagccctgtaattcacatcccaaaatcaaatt |
51455592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 30206819 - 30206922
Alignment:
| Q |
3 |
gtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgtgaagtcaacagctatatagcattaga |
102 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||| | |||||||| ||||| |
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| T |
30206819 |
gtcaaaagagcattttgtacagcttctgtggtagtcaaatattgacgttttgcagttgtcactacaaaaagtgttaagtcattaactatatagaattagt |
30206918 |
T |
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| Q |
103 |
ataa |
106 |
Q |
| |
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|||| |
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| T |
30206919 |
ataa |
30206922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 51480524 - 51480424
Alignment:
| Q |
6 |
aaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgtgaagtcaacagctatatagcattagaata |
105 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| ||| |||||| || |||||| |
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| T |
51480524 |
aaaagagcattctgtacagcttctgtggtagtcaaatattgatgttttgcagttgtcactacaaaaagtgttaaatcattagcaatatagaatcagaata |
51480425 |
T |
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| Q |
106 |
a |
106 |
Q |
| |
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| |
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| T |
51480424 |
a |
51480424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 51497383 - 51497310
Alignment:
| Q |
3 |
gtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgt |
76 |
Q |
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||||||||| ||||||| |||||||||||||||||| |||||||| ||||||||| | |||||||| ||||||| |
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| T |
51497383 |
gtcaaaagaacattttgtacagcttctgtggtagtcgaatattgaggttttgcagatgtcactacagaaagtgt |
51497310 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 43160761 - 43160517
Alignment:
| Q |
1 |
aggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgtgaagtcaacag-----ctatatag |
95 |
Q |
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|||| ||||| |||||||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| ||||| || |
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| T |
43160761 |
aggttaaaagggcattttgtgcagcttctgcggtagtcaaatattgatgttttgcagttgtcactataaaaagtgtgaagccaacattgtcactataaag |
43160662 |
T |
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| Q |
96 |
cattagaataagtnnnnnnngcattgattaatataccaaatcagtccttaccagaacacacgctcatctttagaataatccgccggttttatatttagct |
195 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43160661 |
cattaga-taagtaaagaaaacattgattaatataccaaatcagtccttaccagaacacacgcgcatctttagaataatccgccggttttatatttagca |
43160563 |
T |
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| Q |
196 |
ttgagagtgagagc----cctgtaattcacatcccaaaatcaaatt |
237 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43160562 |
ttgagagtgagagagaggcctgtaattcacatcccaaaatcaaatt |
43160517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 27396535 - 27396465
Alignment:
| Q |
1 |
aggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaa |
71 |
Q |
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|||||||| || |||| || |||||||||||||| ||||||||||||||||||||||| || |||||||| |
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| T |
27396535 |
aggtcaaaggaacattctgtgcagcttctgtggtaatcaaatattgatgttttgcagttgtcgctacaaaa |
27396465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 20868678 - 20868751
Alignment:
| Q |
1 |
aggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagt |
74 |
Q |
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||||||||||||||||||| ||| |||| ||||||||||||||| || | | |||||| |||||||||||||| |
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| T |
20868678 |
aggtcaaaagagcattttgcacaacttcggtggtagtcaaatatcgagctctggcagttgtcactacaaaaagt |
20868751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 137359 - 137431
Alignment:
| Q |
1 |
aggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaag |
73 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| | ||| |||||| ||||||||||||| |
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| T |
137359 |
aggtcaaaagagcattttgtacagcttctgtggtagtcaaatattaagctttggcagttgtcactacaaaaag |
137431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 18085623 - 18085553
Alignment:
| Q |
6 |
aaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgt |
76 |
Q |
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||||||||||| | |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
18085623 |
aaaagagcattctttacagctcctgtggtagtcgaatattgatgttttgcagttgtcactacaaaaagtgt |
18085553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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