View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5248_low_9 (Length: 227)
Name: NF5248_low_9
Description: NF5248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5248_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 47760685 - 47760494
Alignment:
| Q |
18 |
agaagcttggtctcaagccacatattttagtcaacaaatcatttcacgaatgtcaaactaaatgaccgactttcatatccaaattaaagcttcaatccta |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47760685 |
agaagcttggtctcaaaccacatattttagtcaacaaatcatttcacgaatgtcaaactaaatgaccgactttcatatccaaattaaagcttcaatccta |
47760586 |
T |
|
| Q |
118 |
tatttgttggttacttgttaattattccaagacagagagcaatatcagcatggcaattgtttcttgcaagttattacttaccttttattctt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47760585 |
tatttgttggttacttgttaattattccaagacagagagcaatatcagcatggcaattgtttcttgcaagttattacttaccttttattctt |
47760494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 47718559 - 47718374
Alignment:
| Q |
19 |
gaagcttggtctcaagccacatattttagtcaacaaatcatttcacgaatgtcaaactaaatgaccgactttcatatccaaattaaagcttcaatcctat |
118 |
Q |
| |
|
||||||| ||||||| |||||||||||| ||||||||||||||||| | ||||| ||| ||| ||||||||||||| |||||||||||||| |
|
|
| T |
47718559 |
gaagctttgtctcaaaccacatattttactcaacaaatcatttcacccagttcaaattaactgattgactttcatatcc-----aaagcttcaatcctcc |
47718465 |
T |
|
| Q |
119 |
atttgttggttacttgttaattattccaagacagagagcaatat-ca-gcatggcaattgtttcttgcaagttattacttaccttttattct |
208 |
Q |
| |
|
|||| || |||| |||| || |||||||||||||| |||||| || | ||| ||| ||||||| ||||| ||||| || ||||||||||| |
|
|
| T |
47718464 |
atttcttaattacctgtt-cttgttccaagacagagatcaatatacacgaatgacaactgtttctagcaagctattattttccttttattct |
47718374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 47746352 - 47746270
Alignment:
| Q |
18 |
agaagcttggtctcaagccacatattttagtcaacaaatcatttcacgaatgtcaaactaaatgaccgactttcatatccaaa |
100 |
Q |
| |
|
|||||||| ||||||| |||||||||||| ||||||||||||||||| | ||||| ||| ||| |||||||||||||||| |
|
|
| T |
47746352 |
agaagctttgtctcaaaccacatattttactcaacaaatcatttcacccaattcaaattaactgattgactttcatatccaaa |
47746270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University