View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5249-Insertion-1 (Length: 942)

Name: NF5249-Insertion-1
Description: NF5249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5249-Insertion-1
NF5249-Insertion-1
[»] chr4 (9 HSPs)
chr4 (260-942)||(16542636-16543314)
chr4 (8-260)||(16543367-16543618)
chr4 (84-260)||(16871658-16871831)
chr4 (183-262)||(16869511-16869589)
chr4 (121-228)||(37945522-37945630)
chr4 (121-228)||(54146652-54146758)
chr4 (109-176)||(25186951-25187018)
chr4 (124-228)||(14458577-14458681)
chr4 (183-229)||(54148312-54148357)
[»] chr5 (5 HSPs)
chr5 (622-879)||(10018729-10018987)
chr5 (105-260)||(11343875-11344027)
chr5 (78-259)||(24137606-24137786)
chr5 (133-260)||(6643365-6643495)
chr5 (170-260)||(11320490-11320578)
[»] chr8 (5 HSPs)
chr8 (622-879)||(42005957-42006222)
chr8 (90-260)||(33199416-33199583)
chr8 (94-226)||(44374651-44374782)
chr8 (80-214)||(43516178-43516309)
chr8 (186-260)||(43615465-43615538)
[»] chr7 (12 HSPs)
chr7 (635-879)||(49076435-49076685)
chr7 (94-248)||(6840546-6840698)
chr7 (135-260)||(15614230-15614354)
chr7 (105-260)||(46963016-46963168)
chr7 (136-260)||(2628224-2628347)
chr7 (105-260)||(46964370-46964522)
chr7 (107-193)||(39349354-39349440)
chr7 (148-228)||(26402360-26402440)
chr7 (131-193)||(5763704-5763766)
chr7 (190-260)||(6841471-6841540)
chr7 (183-228)||(21814465-21814509)
chr7 (622-695)||(31284976-31285049)
[»] chr3 (14 HSPs)
chr3 (622-868)||(33819412-33819664)
chr3 (78-260)||(42531296-42531477)
chr3 (723-870)||(43337353-43337500)
chr3 (90-260)||(30057092-30057261)
chr3 (124-260)||(814354-814491)
chr3 (93-260)||(18088073-18088237)
chr3 (120-260)||(46691411-46691552)
chr3 (161-260)||(50297467-50297565)
chr3 (149-260)||(42530597-42530705)
chr3 (197-260)||(814267-814329)
chr3 (135-258)||(50294667-50294787)
chr3 (623-658)||(16970464-16970499)
chr3 (171-221)||(46694061-46694111)
chr3 (183-228)||(16463005-16463049)
[»] chr6 (15 HSPs)
chr6 (113-239)||(22868489-22868614)
chr6 (94-260)||(33423916-33424081)
chr6 (111-226)||(18792799-18792914)
chr6 (133-260)||(21862696-21862822)
chr6 (627-694)||(29816696-29816763)
chr6 (112-260)||(18984504-18984651)
chr6 (121-228)||(9290619-9290727)
chr6 (105-260)||(10741779-10741933)
chr6 (115-227)||(13166474-13166585)
chr6 (105-260)||(10740581-10740733)
chr6 (133-203)||(9365085-9365154)
chr6 (623-683)||(1881931-1881991)
chr6 (139-203)||(2979651-2979714)
chr6 (131-214)||(28062983-28063066)
chr6 (133-214)||(28064640-28064723)
[»] scaffold0085 (3 HSPs)
scaffold0085 (636-750)||(47509-47624)
scaffold0085 (799-879)||(47402-47482)
scaffold0085 (737-771)||(47482-47516)
[»] chr2 (7 HSPs)
chr2 (105-260)||(8986934-8987086)
chr2 (127-260)||(32291162-32291294)
chr2 (105-260)||(8985581-8985733)
chr2 (75-174)||(29408963-29409062)
chr2 (650-710)||(42491144-42491204)
chr2 (125-193)||(42633677-42633745)
chr2 (742-799)||(42490426-42490483)
[»] chr1 (6 HSPs)
chr1 (105-260)||(6696022-6696174)
chr1 (130-260)||(15630119-15630250)
chr1 (84-200)||(9168372-9168488)
chr1 (135-260)||(15629325-15629451)
chr1 (622-678)||(49171805-49171861)
chr1 (105-228)||(28665018-28665138)
[»] scaffold0511 (1 HSPs)
scaffold0511 (111-226)||(11227-11342)
[»] scaffold0002 (1 HSPs)
scaffold0002 (154-260)||(406244-406349)


Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 260 - 942
Target Start/End: Complemental strand, 16543314 - 16542636
Alignment:
Q  260 aacaagatgttgactagtagcatagatgagctataaaagaactaccagctgcttagttcctagtgtggagaaatcttttgttagacacacaccagcacat 359  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16543314 aacaagatgctgactagtagcatagatgagctatagaagaactaccagctgcttagttcctagtttggagaaatcttttgttagacacacaccagcacat 16543215  T
Q  360 tatttctaacttattaaaatcattattagaactcataattttacaactggctggaatttcttgaagacaatgatgcttaaaataacagtaacgttttaga 459  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  16543214 tatttctaacttattaaaatcattattagaactcataatttcacaactggctaaaatttcttgaagacaatgatgcttaaaataacagtaacgttttaga 16543115  T
Q  460 attcatacatggataatggcgtggatgttgaaactcctgagatttcgannnnnnnnn--atataacaagagggccttagccccnnnnnnnnnnngataaa 557  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||           |||| |    
T  16543114 attcatgcatggataatggcgtggatgttgaaactcctgagatttcgatttttttttttatataacaagagggccttagccccaaaaaaaa---gataga 16543018  T
Q  558 acaaccgcataacaaaacatagagtcgaaataccaacggagttagccaaaaataataaattaatttaatttgagcaagacaatgctcatataacatcaaa 657  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||| ||||||||||||||||||||    
T  16543017 acaaccgcataacaaaacatagagtcgaaataccaacggagttagccaaaaataataaattaattt-----gagcaagataatgctcatataacatcaaa 16542923  T
Q  658 gaataacctccatcacatgccatattcgccaacgcattgacacatttgtttgcatccgaatgtcaaatcttgatctcccactccaactccaacaatcttc 757  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16542922 gaataacctccatcacatgtcatattcgccaacgcattgacacatttatttgcatccgaatgtcaaatcttgatctctcactccaactccaacaatcttc 16542823  T
Q  758 taatattttgcaataatctccaaccatctacagttcctccttcccctaaagcaagtgtcaaagatactacccaagaaacaatatggaactccactttatg 857  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16542822 taatattttgcaataatctccaaccatctacagttcctccttcccctaaagcaagtgtcaaagatactacccaagaaacaatatggaactccactttatg 16542723  T
Q  858 aaaaccacgcaatgaagccaaccttc-aaca-ccttaagctctgctacatatgcactagcttccaacgatgcattgcttagctaatt 942  Q
    |||||||||||||| ||||||||||| |||| ||  ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16542722 aaaaccacgcaatgtagccaaccttcaaacaccccaaagctctgctacatatgcactagcttccaacgatgcattgcttagttaatt 16542636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 16543618 - 16543367
Alignment:
Q  8 gagagatataccgatgatgtgataaaaaagaccagataagagatagaaagaaaattaaaatgagattgtaattgtgaacaaaacaaatacaaactataga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||    
T  16543618 gagagatataccgatgatgtgataaaaaagaccagataagagatagaaagaaaattaaactgagattgtaattgtgaacaaaacaaatacaaattagaga 16543519  T
Q  108 aagagagaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaacctattga 207  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  16543518 aagagacaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaacttaatga 16543419  T
Q  208 actctaacttactaatataaaaagcccaataacttaagtccaatactttatta 260  Q
    |||||||||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  16543418 actctaacttactaatat-aaaaggccaataacttaagtccattactttatta 16543367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 84 - 260
Target Start/End: Complemental strand, 16871831 - 16871658
Alignment:
Q  84 aacaaaacaaatacaaactatagaaagagagaatatgaacaacaaagacggctagggtttcat-agaatatcaataccttaacattgcaaaaggttacat 182  Q
    ||||| ||| ||||||| |  |||||||||||| | |||||||   ||||||||||||||||| ||| || ||||| ||||||||| |||||||||| |     
T  16871831 aacaatacagatacaaaatggagaaagagagaacaagaacaac---gacggctagggtttcattagactaacaatagcttaacattacaaaaggttataa 16871735  T
Q  183 gagaatatataataaaacctattgaactctaacttactaatataaaaagcccaataacttaagtccaatactttatta 260  Q
    || |||||||||||||| ||| || |||||||||||||||||| ||| ||||||||||||||| | ||||||||||||    
T  16871734 gataatatataataaaatctaatggactctaacttactaatat-aaatgcccaataacttaagcctaatactttatta 16871658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 16869589 - 16869511
Alignment:
Q  183 gagaatatataataaaacctattgaactctaacttactaatataaaaagcccaataacttaagtccaatactttattaac 262  Q
    |||| |||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||    
T  16869589 gagagtatataataaaatctaatgaactctaacttactaatat-aaaagcccaataacttaagctcaatactttattaac 16869511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 37945630 - 37945522
Alignment:
Q  121 aacaacaaagacggctagggtttcat-agaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaacctattgaactctaacttac 219  Q
    ||||| || ||| ||||| ||||||| | |||||||||   |||||||| |||||||||| | |||||||||||||||||  || || ||||||||||||    
T  37945630 aacaagaacgacagctagagtttcattaaaatatcaattgattaacattacaaaaggttataagagaatatataataaaatttaatggactctaacttac 37945531  T
Q  220 taatataaa 228  Q
    |||||||||    
T  37945530 taatataaa 37945522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 54146758 - 54146652
Alignment:
Q  121 aacaacaaagacggctagggtttca-tagaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaacctattgaactctaacttac 219  Q
    ||||||||||||||||| ||||||| || |||||||||| ||||| ||| ||||| ||||   |||||||||| || ||| ||| || ||||||||||||    
T  54146758 aacaacaaagacggcta-ggtttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatgat-aaatctaatggactctaacttac 54146661  T
Q  220 taatataaa 228  Q
    |||||||||    
T  54146660 taatataaa 54146652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 25186951 - 25187018
Alignment:
Q  109 agagagaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaagg 176  Q
    ||||||||||  ||||| |||| ||| |||||||||||| |||||||| | |||||||||||||||||    
T  25186951 agagagaatagaaacaagaaagtcggttagggtttcataaaatatcaacagcttaacattgcaaaagg 25187018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 14458681 - 14458577
Alignment:
Q  124 aacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaacctattgaact-ctaacttactaa 222  Q
    |||||||||||| ||||||||||||||   ||||| ||||| ||  |||||||||||| |||||| ||| |||||||||| |  ||| |||||||| |||    
T  14458681 aacaaagacggcaagggtttcatagaaatccaataacttaatatcacaaaaggttacaagagaatgtat-ataaaacctaatagactactaacttagtaa 14458583  T
Q  223 tataaa 228  Q
    ||||||    
T  14458582 tataaa 14458577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 54148357 - 54148312
Alignment:
Q  183 gagaatatataataaaacctattgaactctaacttactaatataaaa 229  Q
    |||||||||||||||| | ||||| ||||||||||||||||||||||    
T  54148357 gagaatatataataaatc-tattggactctaacttactaatataaaa 54148312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 7e-64; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 622 - 879
Target Start/End: Complemental strand, 10018987 - 10018729
Alignment:
Q  622 ttaatttgagcaagacaatgctcatataacatcaaagaataacctccatcacatgccatattcgccaacgcattgacacatttgtttgcatcc------g 715  Q
    |||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| ||     |||||||||||||| ||       |    
T  10018987 ttaatttgagtaggacaatgttcatataacatcaaagaataacctccatctcatgccatatttgccatcg-----acacatttgtttgcttcacgatatg 10018893  T
Q  716 aatgtcaaatcttgatctcccactccaactccaacaatcttctaatattttgcaataatctccaaccatctacagttcctccttcccctaaagcaagtgt 815  Q
    ||| |  ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| | |||||||||||| ||||||||||||||    
T  10018892 aatattgaatcttgatctcccactccaactccaacaattttctaatattttgcaataagctccaaccatccagagttcctccttctcctaaagcaagtgt 10018793  T
Q  816 caaagatactacccaagaaacaatatggaactccactttatgaaaaccacgcaatgaagccaac 879  Q
    | ||| |||| ||||| || ||||||||| |||||||||||||||||||||||||  |||||||    
T  10018792 cgaagctactgcccaaaaatcaatatggagctccactttatgaaaaccacgcaatctagccaac 10018729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 105 - 260
Target Start/End: Original strand, 11343875 - 11344027
Alignment:
Q  105 agaaagagagaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgc-aaaaggttacatgagaatatataataaaaccta 203  Q
    |||||||||||| ||||| |||||||||||||| ||||||||| || ||||||| ||||||||| | |||| |||| | |||| ||||||||||||| ||    
T  11343875 agaaagagagaacatgaataacaaagacggctaaggtttcata-aaaatcaatagcttaacattacaaaaatgttataagagagtatataataaaactta 11343973  T
Q  204 ttgaactctaacttactaatataaaaagcccaataacttaagtccaatactttatta 260  Q
     || ||||||||||||||||||||| || ||||||| ||||| ||||||||||||||    
T  11343974 atg-actctaacttactaatataaatag-ccaataa-ttaagcccaatactttatta 11344027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 78 - 259
Target Start/End: Complemental strand, 24137786 - 24137606
Alignment:
Q  78 attgtgaacaaaacaaatacaaactatagaaagagaga-atatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaagg 176  Q
    ||||| ||||||||||||||||| || ||||||||| | | | ||| ||||| |  ||||||| ||||||| |||||||||  ||||||||| || ||||    
T  24137786 attgttaacaaaacaaatacaaaatagagaaagagaaagagaggaataacaacggaggctagg-tttcatataatatcaattgcttaacattacagaagg 24137688  T
Q  177 ttacatgagaatatataataaaacctattgaactctaacttactaatataaaaagcccaataacttaagtccaatactttatt 259  Q
    ||| | ||||||||||||||||||||| |  |||||||||||||| | | ||| ||||||||||| |||  ||||||||||||    
T  24137687 ttataagagaatatataataaaacctaatagactctaacttactagtgt-aaaggcccaataactgaagctcaatactttatt 24137606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 133 - 260
Target Start/End: Complemental strand, 6643495 - 6643365
Alignment:
Q  133 ggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaacctattgaactctaacttactaatataa---aa 229  Q
    |||||||||||||||||||| || || |||||||||| ||||||||| |||||||||||||||||||  || |  |||||| |||||||||||||   ||    
T  6643495 ggctagggtttcatagaataaca-tagcttaacattgtaaaaggttatatgagaatatataataaaatttaattgactctatcttactaatataatataa 6643397  T
Q  230 ag-cccaataacttaagtccaatactttatta 260  Q
     | |||||||||||||| ||||||||||||||    
T  6643396 tgacccaataacttaagcccaatactttatta 6643365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 260
Target Start/End: Original strand, 11320490 - 11320578
Alignment:
Q  170 caaaaggttacatgagaatatataataaaacctattgaactctaacttactaatataaaaagcccaataacttaagtccaatactttatta 260  Q
    |||||||||| | |||||||||||||||||  || || |||| |||||||||||||||| || ||||||||||||||| ||||| ||||||    
T  11320490 caaaaggttataagagaatatataataaaa-ttaatggactccaacttactaatataaagag-ccaataacttaagtctaatacattatta 11320578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 3e-60; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 622 - 879
Target Start/End: Original strand, 42005957 - 42006222
Alignment:
Q  622 ttaatttgagcaagacaatgctcatataacatcaaagaataacctcc-atcacatgccatattcgccaacgcattgacacatttgtttgcatc------c 714  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||  |||||||| |||||||||||| |||| | ||||||||||||| ||      |    
T  42005957 ttaatttgagcaggacaatgctcatataacatcaaagaataatctcttatcacatgtcatattcgccaaagcatcggcacatttgtttgcttcacgatac 42006056  T
Q  715 gaatgtcaaatcttgatctcccactccaactccaacaatcttctaatattttgcaataatctccaaccatctacagttcctccttccc-ctaaagcaagt 813  Q
    ||| | | ||||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |||||||||||| |||||||||||    
T  42006057 gaacgccgaatcttgatgtccaactccaactccaataatcttctaatattttgcaataagctccaaccatccacatttcctccttccctctaaagcaagt 42006156  T
Q  814 gtcaaagatactacccaagaaacaatatggaactccactttatgaaaaccacgcaatgaagccaac 879  Q
    ||| ||| |||  |||||||| ||||||| | ||||||||||||||||||| |||||  |||||||    
T  42006157 gtcgaagctacagcccaagaatcaatatgaagctccactttatgaaaaccatgcaatctagccaac 42006222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 90 - 260
Target Start/End: Complemental strand, 33199583 - 33199416
Alignment:
Q  90 acaaatacaaactatagaaagagagaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaata 189  Q
    ||||||||||| || |||||||||||||  |||||||   |  |||||| ||||||||||| ||||| | ||||||||| |||||| ||| | |  ||||    
T  33199583 acaaatacaaaataaagaaagagagaatgagaacaac---ggaggctagagtttcatagaacatcaacaacttaacattacaaaagattataaggaaata 33199487  T
Q  190 tataataaaacct-attgaactctaacttactaatataaaaagcccaataacttaagtccaatactttatta 260  Q
    ||||||||||||| |||  ||||| |||||||||||| |||||| ||||||||||||  |||||||||||||    
T  33199486 tataataaaacctaattatactctgacttactaatat-aaaagctcaataacttaagatcaatactttatta 33199416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 94 - 226
Target Start/End: Complemental strand, 44374782 - 44374651
Alignment:
Q  94 atacaaactatagaaagagagaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatata 193  Q
    ||||||| || ||||||||| |||||||||||||||||||||||   |||||||| ||||||||| || ||||||  ||||| ||| |  ||||||||||    
T  44374782 atacaaaatagagaaagagataatatgaacaacaaagacggcta-aatttcatagcatatcaatagctaaacattaaaaaagattataaaagaatatata 44374684  T
Q  194 ataaaacctattgaactctaacttactaatata 226  Q
    ||||||| || |  ||||||||| |||||||||    
T  44374683 ataaaacataatagactctaactcactaatata 44374651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 214
Target Start/End: Complemental strand, 43516309 - 43516178
Alignment:
Q  80 tgtgaacaaaacaaatacaaactatagaaagagagaatatgaacaacaaagacggctagggtttca-tagaatatcaataccttaacattgcaaaaggtt 178  Q
    ||||||||| ||| ||||||| || ||||| |||||||| ||||||    |||||||||||||||| ||||||| || || ||||||||| || ||||||    
T  43516309 tgtgaacaatacatatacaaaatagagaaacagagaataggaacaat---gacggctagggtttcaatagaataccattagcttaacattacataaggtt 43516213  T
Q  179 acatgagaatatataataaaacctattgaactctaa 214  Q
    ||  |||||||||| |||||||||| || |||||||    
T  43516212 actagagaatatat-ataaaacctaatggactctaa 43516178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 260
Target Start/End: Complemental strand, 43615538 - 43615465
Alignment:
Q  186 aatatataataaaacctattgaactctaacttactaatataaaaagcccaataacttaagtccaatactttatta 260  Q
    |||||||||||||| ||| || |||||||||||||||||| |||||| |||||||| |||| ||||| |||||||    
T  43615538 aatatataataaaatctaatggactctaacttactaatat-aaaagctcaataactaaagttcaatattttatta 43615465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 2e-58; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 635 - 879
Target Start/End: Original strand, 49076435 - 49076685
Alignment:
Q  635 gacaatgctcatataacatcaaagaataacctccatcacatgccatattcgccaacgcattgacacatttgtttgcatc------cgaatgtcaaatctt 728  Q
    ||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||| |||||||||||||| ||      |||||||| |||||     
T  49076435 gacaatgctcatataacatcaaagaataacctttatcacatgtcatattcgccaacgcattaacacatttgtttgcttcacgatacgaatgtcgaatctc 49076534  T
Q  729 gatctcccactccaactccaacaatcttctaatattttgcaataatctccaaccatctacagttcctccttcccctaaagcaagtgtcaaagatactacc 828  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||||| |||||||| || ||| ||||  |||||| |||||| |||||| ||| ||||||     
T  49076535 gatcttccacttcaactccaataatcttctaatattttgcaataagctccaaccttccacacttccaacttcccataaagcgagtgtcgaagctactact 49076634  T
Q  829 caagaaacaatatggaactccactttatgaaaaccacgcaatgaagccaac 879  Q
     ||||| |||||| |||||||||||||| ||||||| |||||  |||||||    
T  49076635 gaagaatcaatatcgaactccactttataaaaaccatgcaatcgagccaac 49076685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 94 - 248
Target Start/End: Original strand, 6840546 - 6840698
Alignment:
Q  94 atacaaactatagaaagagagaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatata 193  Q
    ||||||| || ||||| ||||||||| || ||||||||||| || ||||||||| |||||||||| ||| ||||| |||||||||| |  ||||||||||    
T  6840546 atacaaaatagagaaacagagaatat-aagaacaaagacggttatggtttcataaaatatcaatagctttacattacaaaaggttataaaagaatatata 6840644  T
Q  194 ataaaacctattgaactctaacttactaatataaaaagcccaataacttaagtcc 248  Q
    ||||||||||  | ||||||||||||| |||| ||| ||||||||||||||||||    
T  6840645 ataaaacctaacggactctaacttactgatat-aaaggcccaataacttaagtcc 6840698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 135 - 260
Target Start/End: Original strand, 15614230 - 15614354
Alignment:
Q  135 ctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaacctattgaactctaacttactaatataaaaagccc 234  Q
    |||||||||||||||||| ||||| ||||| ||| |||||||||| |  |||||||||||||||||||| || |||||||||| ||||||| ||| | ||    
T  15614230 ctagggtttcatagaataacaatagcttaatattacaaaaggttataaaagaatatataataaaacctaatggactctaacttgctaatat-aaaggtcc 15614328  T
Q  235 aataacttaagtccaatactttatta 260  Q
    ||||||||||| ||||||||||||||    
T  15614329 aataacttaagcccaatactttatta 15614354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 105 - 260
Target Start/End: Original strand, 46963016 - 46963168
Alignment:
Q  105 agaaagagagaatatgaacaacaaagacggctagggtttcat-agaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaaccta 203  Q
    |||||||||||||| |||||||   |||||||| | |||||| | |||| ||||| ||||||||| |||||||||| | |||||||| |||||||| |||    
T  46963016 agaaagagagaataggaacaac---gacggctacgatttcattataataacaatagcttaacattacaaaaggttataagagaatatctaataaaatcta 46963112  T
Q  204 ttgaactctaacttactaatataaaaagcccaataacttaagtccaatactttatta 260  Q
     || |||||||||||||||||| ||| ||||||||||||||| | ||||||||||||    
T  46963113 atggactctaacttactaatat-aaatgcccaataacttaagcctaatactttatta 46963168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 136 - 260
Target Start/End: Original strand, 2628224 - 2628347
Alignment:
Q  136 tagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaacctattgaactctaacttactaatataaaaagccca 235  Q
    |||||||||||| ||||||||||  |||||||| |||||  |||   ||||||||||||||||||||| || ||||||||||||||||||||| | | ||    
T  2628224 tagggtttcatataatatcaatagtttaacattacaaaaaattatgagagaatatataataaaacctaatggactctaacttactaatataaaga-ctca 2628322  T
Q  236 ataacttaagtccaatactttatta 260  Q
    ||||||||||  |||||||||||||    
T  2628323 ataacttaagctcaatactttatta 2628347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 105 - 260
Target Start/End: Original strand, 46964370 - 46964522
Alignment:
Q  105 agaaagagagaatatgaacaacaaagacggctagggtttcat-agaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaaccta 203  Q
    |||||||||||||| |||||||   |||||||| | |||||| ||| || ||||| ||||| ||| ||||| |||| | ||||||||||||||||| |||    
T  46964370 agaaagagagaataggaacaac---gacggctacgatttcattagactaacaatagcttaatattacaaaaagttataagagaatatataataaaatcta 46964466  T
Q  204 ttgaactctaacttactaatataaaaagcccaataacttaagtccaatactttatta 260  Q
     || |||||||| ||||||||| ||| ||||||||||||||| | ||| ||||||||    
T  46964467 atggactctaacgtactaatat-aaatgcccaataacttaagcctaatcctttatta 46964522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 39349354 - 39349440
Alignment:
Q  107 aaagagagaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatata 193  Q
    |||||||||||  ||||||||| |  ||| |||||||||||||||| || || ||| ||||| |||||||||||| |||||||||||    
T  39349354 aaagagagaatgggaacaacaatggaggcaagggtttcatagaatagcattaacttgacattacaaaaggttacaggagaatatata 39349440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 26402440 - 26402360
Alignment:
Q  148 gaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaacctattgaactctaacttactaatataaa 228  Q
    ||||| ||||| | ||||||| ||||| ||||||  ||||||||||||||||  || | ||||||||||| ||||||||||    
T  26402440 gaataacaatagcataacattacaaaaagttacaaaagaatatataataaaatttaataaactctaacttgctaatataaa 26402360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 5763766 - 5763704
Alignment:
Q  131 acggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatata 193  Q
    |||||| |||| ||||| |||||||||| ||||| ||| ||||| |||||| |||||||||||    
T  5763766 acggcttgggtgtcataaaatatcaatatcttaatattacaaaatgttacaagagaatatata 5763704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 6841471 - 6841540
Alignment:
Q  190 tataataaaacctattgaactctaacttactaatataaaaagcccaataacttaagtccaatactttatta 260  Q
    |||||||||| |||  | ||||||||||||| |||||||  |||||||||||||||||| ||| |||||||    
T  6841471 tataataaaatctaacggactctaacttactgatataaag-gcccaataacttaagtccgatattttatta 6841540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 21814509 - 21814465
Alignment:
Q  183 gagaatatataataaaacctattgaactctaacttactaatataaa 228  Q
    |||||||||||||||| |||| || |||||||||||||||||||||    
T  21814509 gagaatatataataaa-cctaatggactctaacttactaatataaa 21814465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 695
Target Start/End: Original strand, 31284976 - 31285049
Alignment:
Q  622 ttaatttgagcaagacaatgctcatataacatcaaagaataacctccatcacatgccatattcgccaacgcatt 695  Q
    |||| ||||||| |||| ||||||||||| |||| || | |||| ||||||||||| | ||||||||| |||||    
T  31284976 ttaacttgagcaggacattgctcatataaaatcatagtaaaaccaccatcacatgctaaattcgccaaagcatt 31285049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 6e-55; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 622 - 868
Target Start/End: Original strand, 33819412 - 33819664
Alignment:
Q  622 ttaatttgagcaagacaatgctcatataacatcaaagaataacctccatcacatgccatattcgccaacgcattgacacatttgtttgcatc------cg 715  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| |||||||| | ||      ||    
T  33819412 ttaattttagcaggacaatgctcatataacatcaaagaataacctccatcacatgccttattcgccaacacatcgacatatttgttttcttcacgatacg 33819511  T
Q  716 aatgtcaaatcttgatctcccactccaactccaacaatcttctaatattttgcaataatctccaaccatctacagttcctccttcccctaaagcaagtgt 815  Q
    |||| | ||||||||||||||||||||||||||| |||||| |||||||||| |  || ||||||| ||| ||| | |||||||||| |||||| ||||     
T  33819512 aatgccgaatcttgatctcccactccaactccaataatcttataatattttggagcaagctccaacaatccacactccctccttcccttaaagcgagtga 33819611  T
Q  816 caaagatactacccaagaaacaatatggaactccactttatgaaaaccacgca 868  Q
    | ||| ||||||| || || ||||||||| |||||||||||||||| ||||||    
T  33819612 cgaagctactaccgaaaaatcaatatggagctccactttatgaaaagcacgca 33819664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 78 - 260
Target Start/End: Complemental strand, 42531477 - 42531296
Alignment:
Q  78 attgtgaacaaaacaaatacaaactatagaaagagagaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggt 177  Q
    ||||| ||||||||| ||||||| |  ||||||||| |||  ||| ||||| |  ||||||||||||||| |||||||||  ||||||||| ||||||||    
T  42531477 attgttaacaaaacagatacaaaatcaagaaagagaaaatgagaataacaacggaggctagggtttcatacaatatcaatggcttaacattacaaaaggt 42531378  T
Q  178 tacatgagaatatataataaaacctattgaactctaacttactaatataaaaagcccaataacttaagtccaatactttatta 260  Q
    || | ||||||||||||||||||||| |||||| |||||||||||||| ||||| ||||||||| ||| ||||| ||||||||    
T  42531377 tataagagaatatataataaaacctaatgaactttaacttactaatat-aaaagtccaataactcaagcccaatcctttatta 42531296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 723 - 870
Target Start/End: Complemental strand, 43337500 - 43337353
Alignment:
Q  723 aatcttgatctcccactccaactccaacaatcttctaatattttgcaataatctccaaccatctacagttcctccttcccctaaagcaagtgtcaaagat 822  Q
    ||||||||||| ||||||||||| ||| |||||| |||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||| ||| |    
T  43337500 aatcttgatcttccactccaacttcaataatcttttaatattttgcaataagctccaaccatccacagttcctccatctcctaaagcaagtgtcgaagct 43337401  T
Q  823 actacccaagaaacaatatggaactccactttatgaaaaccacgcaat 870  Q
    |||| |||||||  ||||||||  | |||||||  |||||||| ||||    
T  43337400 actatccaagaattaatatggagatgcactttacaaaaaccacacaat 43337353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 90 - 260
Target Start/End: Complemental strand, 30057261 - 30057092
Alignment:
Q  90 acaaatacaaactatagaaagagagaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaata 189  Q
    ||||||||||| || ||||  ||||||||||||||||||||||| ||||| ||||| |||| ||||||| ||||||||| |||||| ||| | |||||||    
T  30057261 acaaatacaaaatagagaacaagagaatatgaacaacaaagacgactaggatttcagagaacatcaatagcttaacattacaaaagattataagagaata 30057162  T
Q  190 tataataaaacctattgaactctaacttactaatataaaaagcccaataacttaagtccaatactttatta 260  Q
    ||||| |||| ||| || |||||||||||  ||||| ||| |||||||||||| |||  ||||||||||||    
T  30057161 tataacaaaatctaatggactctaacttatgaatat-aaatgcccaataacttgagtttaatactttatta 30057092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 124 - 260
Target Start/End: Original strand, 814354 - 814491
Alignment:
Q  124 aacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgaga--atatataataaaacctattgaactctaacttacta 221  Q
    ||||||||| ||||| ||||||||||||| ||||| ||||||||| ||| |||||| | ||||  ||||||||  ||||||| || ||||||||||||||    
T  814354 aacaaagacagctagagtttcatagaataccaatagcttaacattacaagaggttataagagaatatatataacgaaacctaatggactctaacttacta 814453  T
Q  222 atataaaaagcccaataacttaagtccaatactttatta 260  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  814454 atat-aaatgcccaataacttaagtccaatactttatta 814491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 93 - 260
Target Start/End: Original strand, 18088073 - 18088237
Alignment:
Q  93 aatacaaactatagaaagagagaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatat 192  Q
    |||||||| || |||||||||||||| | | |||||| ||||||||||||||||||||| |||||| |||   ||| ||||| ||||   ||||||||||    
T  18088073 aatacaaaatagagaaagagagaatagggaaaacaaa-acggctagggtttcatagaatgtcaatagcttgctattacaaaatgttatgagagaatatat 18088171  T
Q  193 aataaaacctattgaactctaacttactaatataaaaagcccaataacttaagtccaatactttatta 260  Q
    ||| ||||||| || |||||||||||||||||| ||| ||| |||| |||||| ||||||||||||||    
T  18088172 aat-aaacctaatggactctaacttactaatat-aaaggcctaatagcttaagcccaatactttatta 18088237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 120 - 260
Target Start/End: Original strand, 46691411 - 46691552
Alignment:
Q  120 gaacaacaaagacggctagggtttc---atagaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaacctattgaactctaact 216  Q
    |||||||||||||||||||| |||    ||||  | |||||  ||||||||| |||||||||| | ||||||||||||||||| ||| || |||||||||    
T  46691411 gaacaacaaagacggctaggatttatcaatagcttgtcaatgacttaacattacaaaaggttataagagaatatataataaaa-ctaatggactctaact 46691509  T
Q  217 tactaatataaaaagcccaataacttaagtccaatactttatta 260  Q
    ||||| ||| ||| | |||||||||||||| |||||||||||||    
T  46691510 tactagtat-aaaggtccaataacttaagttcaatactttatta 46691552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 50297565 - 50297467
Alignment:
Q  161 ttaacattgcaaaaggttacatgagaatatataataaaacctattgaactctaacttactaatataaaaagcccaataacttaagtccaatactttatta 260  Q
    |||||||| |||||||||| | | ||| |||||||||||| || |||||||||||||||||||||||| | | ||||||||||||  |||||||||||||    
T  50297565 ttaacattacaaaaggttataagtgaacatataataaaacataatgaactctaacttactaatataaaga-ctcaataacttaagcacaatactttatta 50297467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 149 - 260
Target Start/End: Complemental strand, 42530705 - 42530597
Alignment:
Q  149 aatatcaataccttaacattgcaaaaggttacatgagaatatataataaaacctattgaactctaacttactaatataaaaagcccaataacttaagtcc 248  Q
    |||||||||  ||||||||| |||| ||||| | ||||||||||||||||||||| |||||| ||| ||||||||||||||  | |  ||||| ||||||    
T  42530705 aatatcaatggcttaacattacaaa-ggttataagagaatatataataaaacctaatgaactttaatttactaatataaaagtcac--taactcaagtcc 42530609  T
Q  249 aatactttatta 260  Q
    ||||||||||||    
T  42530608 aatactttatta 42530597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 814329 - 814267
Alignment:
Q  197 aaacctattgaactctaacttactaatataaaaagcccaataacttaagtccaatactttatta 260  Q
    ||||||| || |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  814329 aaacctaatggactctaacttactaatataaat-gcccaataacttaagtccaatactttatta 814267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 258
Target Start/End: Complemental strand, 50294787 - 50294667
Alignment:
Q  135 ctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaacctattgaactctaacttactaatataaaaagccc 234  Q
    ||||||||||  | ||||| |||  ||||| ||| ||||| |||| | || |||||||||||||||||| || ||||||||||| ||||||  ||||  |    
T  50294787 ctagggtttccaataatattaattacttaatattacaaaatgttataagataatatataataaaacctaatggactctaacttattaatat--aaaggtc 50294690  T
Q  235 aataacttaagtccaatactttat 258  Q
    ||||||||||| ||||||||||||    
T  50294689 aataacttaag-ccaatactttat 50294667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 623 - 658
Target Start/End: Original strand, 16970464 - 16970499
Alignment:
Q  623 taatttgagcaagacaatgctcatataacatcaaag 658  Q
    ||||||||||| ||||||||||||||||||||||||    
T  16970464 taatttgagcaggacaatgctcatataacatcaaag 16970499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 46694061 - 46694111
Alignment:
Q  171 aaaaggttacatgagaatatataataaaacctattgaactctaacttacta 221  Q
    ||||| ||| |||||||||||||||||||| || |||||||||| ||||||    
T  46694061 aaaagattatatgagaatatataataaaacataatgaactctaagttacta 46694111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 16463049 - 16463005
Alignment:
Q  183 gagaatatataataaaacctattgaactctaacttactaatataaa 228  Q
    |||||||||||||||| |||| || |||||||||||||||||||||    
T  16463049 gagaatatataataaa-cctaatggactctaacttactaatataaa 16463005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 2e-36; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 113 - 239
Target Start/End: Complemental strand, 22868614 - 22868489
Alignment:
Q  113 agaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaacctattgaactct 212  Q
    |||||| |||||||||||| |||||||||||||||||||||||||| | ||||||| ||||| |||| | ||||||||||||||||||||| || |||||    
T  22868614 agaataggaacaacaaagatggctagggtttcatagaatatcaatagcataacattacaaaaagttataagagaatatataataaaacctaatggactct 22868515  T
Q  213 aacttactaatataaaaagcccaataa 239  Q
    ||||||||||||| |||||||||||||    
T  22868514 aacttactaatat-aaaagcccaataa 22868489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 94 - 260
Target Start/End: Original strand, 33423916 - 33424081
Alignment:
Q  94 atacaaactatagaaagagagaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatata 193  Q
    ||||||| || ||||||||||||    ||||| |||||||||||||||||| ||||||| ||||| || |||||| |||| |||||   |||||||||||    
T  33423916 atacaaaatagagaaagagagaacgataacaataaagacggctagggtttcgtagaataacaatagctcaacattacaaagggttatgggagaatatata 33424015  T
Q  194 ataaaacctattgaactctaacttactaatataaaaagcccaataacttaagtccaatactttatta 260  Q
    |||||||||| |||||| ||||||||||||||||| | | ||||||||||||  |||||||||||||    
T  33424016 ataaaacctaatgaactttaacttactaatataaaga-cgcaataacttaagctcaatactttatta 33424081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 18792799 - 18792914
Alignment:
Q  111 agagaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaacctattgaact 210  Q
    ||||||||  ||||||||| |||||||| |||||||| ||||||||||  |||||||| |||||||||| | ||||||||| |||||||| || || |||    
T  18792799 agagaataaaaacaacaaatacggctagagtttcataaaatatcaatagtttaacattacaaaaggttataagagaatatacaataaaacttaatgcact 18792898  T
Q  211 ctaacttactaatata 226  Q
     |||||||||||||||    
T  18792899 ttaacttactaatata 18792914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 133 - 260
Target Start/End: Complemental strand, 21862822 - 21862696
Alignment:
Q  133 ggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaacctattgaactctaacttactaatataaaaagc 232  Q
    |||||||||||||||||||| ||||  ||||| ||| ||||  |||||  ||||||||||||||||||||| || |||||||||| |||||||||| | |    
T  21862822 ggctagggtttcatagaataacaattgcttaatattacaaagagttactagagaatatataataaaacctaatgcactctaacttgctaatataaaga-c 21862724  T
Q  233 ccaataacttaagtccaatactttatta 260  Q
    |||||| ||||||  |||||||||||||    
T  21862723 ccaatagcttaagctcaatactttatta 21862696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 627 - 694
Target Start/End: Original strand, 29816696 - 29816763
Alignment:
Q  627 ttgagcaagacaatgctcatataacatcaaagaataacctccatcacatgccatattcgccaacgcat 694  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||    
T  29816696 ttgagcaagacaatgctcatataacatcaaataataaccttcatcacatgtcatattcgccaacgcat 29816763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 112 - 260
Target Start/End: Complemental strand, 18984651 - 18984504
Alignment:
Q  112 gagaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaacctattgaactc 211  Q
    |||||||  ||||| ||| ||||||||||||||||| |||| ||||| | |  |||| | |||||||| | |||||||||||||||||| || || ||||    
T  18984651 gagaatagaaacaagaaaaacggctagggtttcataaaataacaatagcattgcattactaaaggttataagagaatatataataaaacataatgtactc 18984552  T
Q  212 taacttactaatataaaaagcccaataacttaagtccaatactttatta 260  Q
    |||||||||||||| ||| |||||||||  |||| |||||| |||||||    
T  18984551 taacttactaatat-aaaggcccaataatctaagcccaatattttatta 18984504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 9290619 - 9290727
Alignment:
Q  121 aacaacaaagacggctagggtttcat-agaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaacctattgaactctaacttac 219  Q
    ||||| || ||||||||||||||||| |||||| ||||    ||||||| |||||||||| | ||||||||||||||||||||| || |||||||||||     
T  9290619 aacaagaatgacggctagggtttcattagaataacaattgtctaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttat 9290718  T
Q  220 taatataaa 228  Q
    |||||||||    
T  9290719 taatataaa 9290727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 105 - 260
Target Start/End: Complemental strand, 10741933 - 10741779
Alignment:
Q  105 agaaagagagaatatgaacaacaaagacggctagggtttca-tagaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaaccta 203  Q
    |||||||||||||| ||| | ||| |  ||| ||||||||| ||||||||||||  ||||| ||| ||||| ||||   ||||||||||||| ||| |||    
T  10741933 agaaagagagaataagaatagcaacggaggccagggtttcaatagaatatcaattgcttaatattacaaaatgttatgagagaatatataat-aaatcta 10741835  T
Q  204 ttgaactctaacttactaatataaaaagcccaataacttaagtccaatactttatta 260  Q
     || |||||||||| |||||||||| | |||||||||||||| |||||| |||||||    
T  10741834 atggactctaactttctaatataaaga-cccaataacttaagcccaatattttatta 10741779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 13166585 - 13166474
Alignment:
Q  115 aatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaacctattgaactctaa 214  Q
    |||| |||||||||  ||||||||||||||||| |||||||||  |||||||||  |||||||||   ||||||||||||||| || || ||||||||||    
T  13166585 aataggaacaacaataacggctagggtttcataaaatatcaatggcttaacatt-aaaaaggttatgagagaatatataataacacttaatgaactctaa 13166487  T
Q  215 cttactaatataa 227  Q
    |||  ||||||||    
T  13166486 cttgttaatataa 13166474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 260
Target Start/End: Complemental strand, 10740733 - 10740581
Alignment:
Q  105 agaaagagagaatatgaacaacaaagacggctagggtttca-tagaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaaccta 203  Q
    |||||||||||||| ||| | ||| |  ||||||||||||| ||||||||||||| ||||| ||| ||||| ||||   ||||||||||||| |||| ||    
T  10740733 agaaagagagaataagaatagcaacggaggctagggtttcaatagaatatcaataacttaatattacaaaatgttatgagagaatatataat-aaacgta 10740635  T
Q  204 ttgaactctaacttactaatataaaaagcccaataacttaagtccaatactttatta 260  Q
     || ||||||| || |||||||||| |   |||||||||||| |||||| |||||||    
T  10740634 atggactctaatttgctaatataaaga---caataacttaagcccaatattttatta 10740581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 9365085 - 9365154
Alignment:
Q  133 ggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaaccta 203  Q
    ||||||| |||| || |||||||||| ||||||||| |||||||||||| |||||||||| ||||||||||    
T  9365085 ggctaggatttcctataatatcaataacttaacattacaaaaggttacaagagaatatat-ataaaaccta 9365154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 683
Target Start/End: Original strand, 1881931 - 1881991
Alignment:
Q  623 taatttgagcaagacaatgctcatataacatcaaagaataacctccatcacatgccatatt 683  Q
    ||||||||||| ||||||||||||||||||||||||   | ||||||||||| || |||||    
T  1881931 taatttgagcaggacaatgctcatataacatcaaagtgaatcctccatcacaagctatatt 1881991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 2979714 - 2979651
Alignment:
Q  139 ggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaaccta 203  Q
    |||||||| ||||||||||| ||||||||| |||||| ||||| |||||||| | ||||||||||    
T  2979714 ggtttcatggaatatcaatagcttaacattacaaaagattacaagagaatatgt-ataaaaccta 2979651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 28062983 - 28063066
Alignment:
Q  131 acggctagggtttcata-gaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaacctattgaactctaa 214  Q
    ||||||||||||||||| || || ||||| ||||||||| |||||||||||  |||||||||| |||||| ||| || |||||||    
T  28062983 acggctagggtttcatatgattaacaatagcttaacattacaaaaggttactagagaatatat-ataaaatctaatggactctaa 28063066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 28064640 - 28064723
Alignment:
Q  133 ggctagggtttcata-gaatatcaataccttaacattgcaaaaggttacatgagaatatata-ataaaacctattgaactctaa 214  Q
    ||||||||||||||| || || ||||| ||||||||| |||||||||||  ||||||||| | |||||||||| || |||||||    
T  28064640 ggctagggtttcatatgattaacaatagcttaacattacaaaaggttactagagaatataaatataaaacctaatggactctaa 28064723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 64; Significance: 2e-27; HSPs: 3)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 636 - 750
Target Start/End: Complemental strand, 47624 - 47509
Alignment:
Q  636 acaatgctcatataacatcaaagaataacctccatcacatgccatattcgccaacgcattgacacatttgtttgc-atccgaatgtcaaatcttgatctc 734  Q
    ||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| || | || ||||||||||  | |||||| | ||||||||||||    
T  47624 acaatgctcatataatatcaaagaaaaacctccatcacatgtcatattcgccaacgtatcggcatatttgtttgctttacgaatgccgaatcttgatctc 47525  T
Q  735 ccactccaactccaac 750  Q
    ||||||||||||||||    
T  47524 ccactccaactccaac 47509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 799 - 879
Target Start/End: Complemental strand, 47482 - 47402
Alignment:
Q  799 tcccctaaagcaagtgtcaaagatactacccaagaaacaatatggaactccactttatgaaaaccacgcaatgaagccaac 879  Q
    |||||||||||||||||| ||  ||||| | ||||| ||||||| |||||||||||||||||||||| ||||  |||||||    
T  47482 tcccctaaagcaagtgtccaaactactatctaagaatcaatatgaaactccactttatgaaaaccacacaatctagccaac 47402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 737 - 771
Target Start/End: Complemental strand, 47516 - 47482
Alignment:
Q  737 actccaactccaacaatcttctaatattttgcaat 771  Q
    |||||||||||||||||||||| ||||||||||||    
T  47516 actccaactccaacaatcttctcatattttgcaat 47482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 7e-27; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 105 - 260
Target Start/End: Complemental strand, 8987086 - 8986934
Alignment:
Q  105 agaaagagagaatatgaacaacaaagacggctagggtttcat-agaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaaccta 203  Q
    |||||||||||||| |||||||   |||||||| | |||||| ||| || ||||| ||||||||| |||||||||| | |||||||||||||||||  ||    
T  8987086 agaaagagagaataggaacaac---gacggctacgatttcattagactaacaatagcttaacattacaaaaggttataagagaatatataataaaattta 8986990  T
Q  204 ttgaactctaacttactaatataaaaagcccaataacttaagtccaatactttatta 260  Q
     || |||||||||||||||||| ||| ||||||||||||||| | ||||||||||||    
T  8986989 atggactctaacttactaatat-aaatgcccaataacttaagcctaatactttatta 8986934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 127 - 260
Target Start/End: Complemental strand, 32291294 - 32291162
Alignment:
Q  127 aaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaacctattgaactctaacttactaatata 226  Q
    ||||||||||| |||||||||||||||||||  |||  |||| |||||||||| | |||||||||||||||| | || || |||||||||||||||||||    
T  32291294 aaagacggctatggtttcatagaatatcaattgcttttcattacaaaaggttataagagaatatataataaatcttaatggactctaacttactaatata 32291195  T
Q  227 aaaagcccaataacttaagtccaatactttatta 260  Q
    || | | ||||||||||||  |||||||||||||    
T  32291194 aaga-cacaataacttaagctcaatactttatta 32291162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 105 - 260
Target Start/End: Complemental strand, 8985733 - 8985581
Alignment:
Q  105 agaaagagagaatatgaacaacaaagacggctagggtttcat-agaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaaccta 203  Q
    |||||||||||||| |||||||   |||||||| | |||||| ||| || ||||| ||||||||| |||||||||| | ||||||||||||||||| |||    
T  8985733 agaaagagagaataggaacaac---gacggctacgatttcattagactaacaatagcttaacattacaaaaggttataagagaatatataataaaatcta 8985637  T
Q  204 ttgaactctaacttactaatataaaaagcccaataacttaagtccaatactttatta 260  Q
     || ||| |||||||||||||| ||| | ||||||||||||| | ||||||||||||    
T  8985636 atggactttaacttactaatat-aaatgtccaataacttaagcctaatactttatta 8985581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 29408963 - 29409062
Alignment:
Q  75 gtaattgtgaacaaaacaaatacaaactatagaaagagagaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaa 174  Q
    |||| ||| ||||| ||| ||||||| || |||||||||||||| |||||||||||||||  ||| ||||||||||||  |||| |||||||||||||||    
T  29408963 gtaagtgttaacaatacatatacaaaatagagaaagagagaataagaacaacaaagacggtcaggatttcatagaataataataacttaacattgcaaaa 29409062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 650 - 710
Target Start/End: Complemental strand, 42491204 - 42491144
Alignment:
Q  650 acatcaaagaataacctccatcacatgccatattcgccaacgcattgacacatttgtttgc 710  Q
    |||||||||||  ||||||||||||||||||||||| || ||||| | ||||||| |||||    
T  42491204 acatcaaagaaacacctccatcacatgccatattcgtcagcgcatcggcacatttatttgc 42491144  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 42633677 - 42633745
Alignment:
Q  125 acaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatata 193  Q
    ||||| |||| || |||||||||||||||||||  ||||||||| |||||| ||||  |||||||||||    
T  42633677 acaaaaacggttatggtttcatagaatatcaattgcttaacattacaaaagattactagagaatatata 42633745  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 742 - 799
Target Start/End: Complemental strand, 42490483 - 42490426
Alignment:
Q  742 aactccaacaatcttctaatattttgcaataatctccaaccatctacagttcctcctt 799  Q
    ||||||| ||||||  |||||||||||||||| ||||||||||| |||  ||||||||    
T  42490483 aactccaccaatctcttaatattttgcaataagctccaaccatccacaactcctcctt 42490426  T

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Target: chr1 (Bit Score: 63; Significance: 7e-27; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 105 - 260
Target Start/End: Complemental strand, 6696174 - 6696022
Alignment:
Q  105 agaaagagagaatatgaacaacaaagacggctagggtttcat-agaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaaccta 203  Q
    |||||||||||||| |||||||   |||||||| | |||||| ||| || ||||| ||||||||| |||||||||| | |||||||| |||||||| |||    
T  6696174 agaaagagagaataggaacaac---gacggctacgatttcattagactaacaatagcttaacattacaaaaggttataagagaatatttaataaaatcta 6696078  T
Q  204 ttgaactctaacttactaatataaaaagcccaataacttaagtccaatactttatta 260  Q
     || |||||||||||||||||| ||| ||||||||||||||| | ||||||||||||    
T  6696077 atggactctaacttactaatat-aaatgcccaataacttaagcctaatactttatta 6696022  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 130 - 260
Target Start/End: Original strand, 15630119 - 15630250
Alignment:
Q  130 gacggctagggtttcatagaatat--caataccttaacattgcaaaaggttacatgagaatatataataaaacctattgaactctaacttactaatataa 227  Q
    |||||||||||||||||| |||||  ||||| ||||| ||| |||||||||| | ||||||||||||||||||||| |  |||||||||||||||||| |    
T  15630119 gacggctagggtttcataaaatatttcaataacttaatattccaaaaggttataagagaatatataataaaacctaatagactctaacttactaatat-a 15630217  T
Q  228 aaagcccaataacttaagtccaatactttatta 260  Q
    || ||||||||| |||||  |||||||||||||    
T  15630218 aaggcccaataatttaagctcaatactttatta 15630250  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 9168372 - 9168488
Alignment:
Q  84 aacaaaacaaatacaaactatagaaagagagaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatg 183  Q
    ||||| ||| ||||||| || ||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||| | ||  ||||| |||| | |    
T  9168372 aacaatacatatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgttataag 9168471  T
Q  184 agaatatataataaaac 200  Q
    |||||||||||||||||    
T  9168472 agaatatataataaaac 9168488  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 135 - 260
Target Start/End: Original strand, 15629325 - 15629451
Alignment:
Q  135 ctagggtttcatagaatat--caataccttaacattgcaaaaggttacatgagaatatataataaaacctattgaactctaacttactaatataaaaagc 232  Q
    ||||||||||||| |||||  ||||| ||||| ||| |||||||||| | ||||||||||||||||| ||| ||||||||||||||||||||| ||| |     
T  15629325 ctagggtttcataaaatatttcaatagcttaatattacaaaaggttataagagaatatataataaaatctaatgaactctaacttactaatat-aaaggt 15629423  T
Q  233 ccaataacttaagtccaatactttatta 260  Q
    ||||||||||||| |||||| |||||||    
T  15629424 ccaataacttaagcccaatattttatta 15629451  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 622 - 678
Target Start/End: Complemental strand, 49171861 - 49171805
Alignment:
Q  622 ttaatttgagcaagacaatgctcatataacatcaaagaataacctccatcacatgcc 678  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  49171861 ttaatttgagcacgacaatgctcatataacatcaaagaataacctccatcacatgcc 49171805  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 105 - 228
Target Start/End: Complemental strand, 28665138 - 28665018
Alignment:
Q  105 agaaagagagaatatgaacaacaaagacggctagggtttcat-agaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaaccta 203  Q
    |||||||||||||| |||||||   ||||||||||||||||| |||||| ||||| ||||| ||| ||||| ||||   |||||||||||||||| ||||    
T  28665138 agaaagagagaataggaacaac---gacggctagggtttcattagaataacaatagcttaatattacaaaatgttatgagagaatatataataaa-ccta 28665043  T
Q  204 ttgaactctaacttactaatataaa 228  Q
     || |||||||||||||||||||||    
T  28665042 atggactctaacttactaatataaa 28665018  T

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Target: scaffold0511 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 11342 - 11227
Alignment:
Q  111 agagaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaacctattgaact 210  Q
    ||||||||  ||||||||| |||||||| |||||||| ||||||||||  |||||||| |||||||||| | ||||||||| |||||||| || || |||    
T  11342 agagaataaaaacaacaaatacggctagagtttcataaaatatcaatagtttaacattacaaaaggttataagagaatatacaataaaacttaatgcact 11243  T
Q  211 ctaacttactaatata 226  Q
     |||||||||||||||    
T  11242 ttaacttactaatata 11227  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 406244 - 406349
Alignment:
Q  154 caataccttaacattgcaaaaggttacatgagaatatataataaaacctattgaactctaacttactaatataaaaagcccaataacttaagtccaatac 253  Q
    ||||| ||||| |||  ||||||||| |  ||||||||||||||||| ||  | |||||||||| ||||||| ||| ||||||||||||||  | |||||    
T  406244 caataacttaatattagaaaaggttataatagaatatataataaaacttaaaggactctaacttgctaatat-aaaggcccaataacttaaacctaatac 406342  T
Q  254 tttatta 260  Q
    |||||||    
T  406343 tttatta 406349  T

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