View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5249-Insertion-2 (Length: 480)
Name: NF5249-Insertion-2
Description: NF5249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5249-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 104 - 479
Target Start/End: Complemental strand, 18843902 - 18843527
Alignment:
| Q |
104 |
atcattatttaatggtaattacctatcaatagcttctgtgaagagctcaagttcttccagggtgccatacaaatcatacacatcatcaactgtggtaatt |
203 |
Q |
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| T |
18843902 |
atcattatttaactgtaattacctatcaatagcttctgtgaagagctcaagttcttccagggtgccatacaaatcatacacatcatcaactgtggtaatt |
18843803 |
T |
|
| Q |
204 |
aatgcattgatctttgtcataccaattctgaattgttcaaaatctggcttgaaatttgctccaacattccaaacaaagttctcaaccaatctatccctag |
303 |
Q |
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| T |
18843802 |
aatgcattgatctttgtcataccaattctgaattgttcaaaatctggcttgaaatttgctccaacattccaaataaagttctcaaccaatctatccctag |
18843703 |
T |
|
| Q |
304 |
taaagctcagtttttctgcgattgcagttcctttccaccatctgaaaatgaagaaaaaattgatcaaattattagtagaaagtatggccaatttctctca |
403 |
Q |
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| T |
18843702 |
tgaagctcagtttttctacgattgcagttcctttccaccatctgaaaatgaagaaaaaattgatcaaattattagtagaaagtatggccaatctctctca |
18843603 |
T |
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| Q |
404 |
attctttgactattgatccaaatgggtcaagatcttcttcatttctcaaagaaacaaaggatttttggaaaacttg |
479 |
Q |
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| T |
18843602 |
attctttgactattgattcaaatgggtcaagatcctcttcatttctcaaagaaacaaaggacttttggaaaacttg |
18843527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 18843999 - 18843940
Alignment:
| Q |
7 |
atccaaagcattcaaatcccatctagaatcaccaaacacaatattgataatttctataac |
66 |
Q |
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| T |
18843999 |
atccaaggcattcaaatcccatctagaatcaccaaacacaatattgataatttctataac |
18843940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 121 - 346
Target Start/End: Original strand, 27326518 - 27326743
Alignment:
| Q |
121 |
attacctatcaatagcttctgtgaagagctcaagttcttccagggtgccatacaaatcatacacatcatcaactgtggtaattaatgcattgatctttgt |
220 |
Q |
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||||||||||||| |||| |||||||||||| |||||||||| |||||||||| ||| ||||||||||||| |||||||||| | ||||| |||||| |
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| T |
27326518 |
attacctatcaattgcttttgtgaagagctctagttcttccaatgtgccatacacatcgtacacatcatcaatgatggtaattaaggaattgacctttgt |
27326617 |
T |
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| Q |
221 |
cataccaattctgaattgttcaaaatctggcttgaaatttgctccaacattccaaacaaagttctcaaccaatctatccctagtaaagctcagtttttct |
320 |
Q |
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| T |
27326618 |
caaaacttttcgaaaataatcaaattctggcttgaaattagttcccacagtccaaacaaagttctcaaccaatctatctcttgcaaagctcaaattatct |
27326717 |
T |
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| Q |
321 |
gcgattgcagttcctttccaccatct |
346 |
Q |
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| | || ||||| |||||||||||| |
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| T |
27326718 |
ccaagtgtagttcttttccaccatct |
27326743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 312
Target Start/End: Original strand, 27445001 - 27445190
Alignment:
| Q |
123 |
tacctatcaatagcttctgtgaagagctcaagttcttccagggtgccatacaaatcatacacatcatcaactgtggtaattaatgcattgatctttgtca |
222 |
Q |
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||||||||||| |||| |||||||| | |||||||||| ||| ||||| | ||||||||| ||||| | || |||||| | |||||||| |||||||| |
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| T |
27445001 |
tacctatcaattgctttagtgaagagttgtagttcttccaaggtaccatatacatcatacacgtcatcgattgaggtaataagtgcattgacctttgtca |
27445100 |
T |
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| Q |
223 |
taccaattctgaattgttcaaaatctggcttgaaatttgctccaacattccaaacaaagttctcaaccaatctatccctagtaaagctca |
312 |
Q |
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| T |
27445101 |
tttcttttcggtaatattctaaatctggctcataacttgttcccactgaccaaacaaagttttcaaccaatctattccttgcaaagctca |
27445190 |
T |
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