View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5249-Insertion-3 (Length: 475)
Name: NF5249-Insertion-3
Description: NF5249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5249-Insertion-3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 8 - 475
Target Start/End: Original strand, 5012828 - 5013294
Alignment:
| Q |
8 |
actcctaaattttttcattctctcaacaacagcgaaagttattcttcccataaagaccaagattttccttccaagtgatacacaaaataccaagatttta |
107 |
Q |
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| T |
5012828 |
actcctaaattttttcattctctcaacaacagcgaaagttattcttcccataaagaccaagattttccttccaagtgatacacaaaataccaagatttta |
5012927 |
T |
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| Q |
108 |
atgttttggactgtgacaagttagttaatttcagcatattttttgttatgatgttttaaatagttattccctttttgttaattaattcatatttggttcc |
207 |
Q |
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| T |
5012928 |
atgttttggactgtgacaagttagttaatttcagcatattttttgttatgatgttttaaatagttattccctttttgttaattaattcatatttggttcc |
5013027 |
T |
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| Q |
208 |
aaatgtgaaacttaattttccatttggtttaataatctatgccatgcaaaggtttagcaacaatgaatttttcaagtgcaagagctctctatgaagtgat |
307 |
Q |
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| T |
5013028 |
aaatgtgaaacttaattttccatttagtttaataatctatgccatgcaaaggtttagcaacaatgaatttttcaagtgcaagagctctctatgaagtgat |
5013127 |
T |
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| Q |
308 |
aataaattgttctagaagtgaaagcatgctcagaaaaattaacttacttattctctaaattgagaaagctatatatgaagnnnnnnnnaagagaaagcta |
407 |
Q |
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| T |
5013128 |
aataaattgttctagaagtgaaagcatgctcagaaaaattaacttacttattctctaaattgagaaagctatatatgaag-tttttttaagagaaagcta |
5013226 |
T |
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| Q |
408 |
tgaagttagaattaaaattataatttttaatacgggtttgaatgagacaaaattctataatctagtgc |
475 |
Q |
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| T |
5013227 |
tgaagttagaattaaaattataatttttaatacgggtttgaatgagacaaaattctataatctagtgc |
5013294 |
T |
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