View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5249-Insertion-4 (Length: 470)

Name: NF5249-Insertion-4
Description: NF5249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5249-Insertion-4
NF5249-Insertion-4
[»] chr3 (1 HSPs)
chr3 (7-470)||(24983712-24984173)


Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 7 - 470
Target Start/End: Original strand, 24983712 - 24984173
Alignment:
Q  7 atgttggaacaaaatgcgtatgccagtgtgtgaattgaattttttgtatacgtcccacacaggagagactagatacaatactaatatttatataatgcat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24983712 atgttggaacaaaatgcgtatgccagtgtgtgaattgaattttttgtatacgtcccacacaggagagactagatacaatactaatatttatataatgcat 24983811  T
Q  107 gtatgataccttgggctgtgctcgaaggggtgcccaattttaaaaccgggagatgacacagtcaagatgatcaaatcacatgcgcgcccggcaccatcta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  24983812 gtatgataccttgggctgtgctcgaaggggtgcccaattttaaaaccgggagatgacacagtcaacatgatcaaatcacatgagcgcccggcaccatcta 24983911  T
Q  207 gtctgctgggcttggactacatggcaaattaagatcctgtccatgccatctcaacgtcacacttctaaatatgtttgcgtgtgtccaacacattccacat 306  Q
    ||| |||||||||||||||  |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  24983912 gtcagctgggcttggacta--tggcgaattaagatcctgtccatgccatctcaacgtcacgcttctaaatatgtttgcgtgtgtccaacacattccgcat 24984009  T
Q  307 ctgctttaattttcggtatgttcgggtcgttcgtttcccaacagatatgcaatataagtcatcattattgtttcatttttagttttcgcactatataaag 406  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24984010 ccgctttaattttcggtattttcgggtcgttcgtttcccaacagatatgcaatataagtcatcattattgtttcatttttagttttcgcactatataaag 24984109  T
Q  407 ggtgctcggatctcattttaactcacaccaaaactcaaagcattatagagttttctctcttctc 470  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24984110 ggtgctcggatctcatcttaactcacaccaaaactcaaagcattatagagttttctctcttctc 24984173  T

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