View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5249-Insertion-5 (Length: 370)
Name: NF5249-Insertion-5
Description: NF5249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5249-Insertion-5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 8 - 370
Target Start/End: Complemental strand, 41080936 - 41080574
Alignment:
| Q |
8 |
tggaggagatggaagagtttagtaatgatagcattgcaaagcttctaaacaaatcaggcatttcaccttcggagatcgatattcttgtggtaaatgtatc |
107 |
Q |
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| T |
41080936 |
tggaggagatggaagagttttgtaatgatagcattacaaagcttctaaataaatcaggcatttcaccttcggagatcgatattcttgtggtaaatgtatc |
41080837 |
T |
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| Q |
108 |
tttattctcttctgttccttctttaacttcaagaatcattaaccattacagaatgagagaggatataaaagcttataacctatctggtatgggttgtagt |
207 |
Q |
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| T |
41080836 |
tttattctcttctgttccttctttaacttcaagaatcattaaccattacaaaatgagagaggatataaaagcttataacctatctggtatgggttgtagt |
41080737 |
T |
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| Q |
208 |
gctagtctaatctcattagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaacatcagagtctcttagtacaaattggt |
307 |
Q |
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| T |
41080736 |
gctagtctaatctcattagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaacatcagagtctcttagtacaaattggt |
41080637 |
T |
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| Q |
308 |
attcaggaatcaataggtcaatgattcttgcaaattgtcttttccgtaccggcggttgtgcaa |
370 |
Q |
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| T |
41080636 |
attcaggaatcaataggtcaatgattcttgcaaattgtcttttccgtaccggcggttgtgcaa |
41080574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 191 - 368
Target Start/End: Complemental strand, 23078267 - 23078090
Alignment:
| Q |
191 |
ctggtatgggttgtagtgctagtctaatctcattagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaacatcagagtc |
290 |
Q |
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| T |
23078267 |
ctggaatgggttgtagtgctagtcttatatcagtagatattgttaaaaacattttcaaatcacaaagaaacaagttagcacttttggtcacatcagagtc |
23078168 |
T |
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| Q |
291 |
tcttagtacaaattggtattcaggaatcaataggtcaatgattcttgcaaattgtcttttccgtaccggcggttgtgc |
368 |
Q |
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| T |
23078167 |
tcttagtccaaattggtatcctggtagtaatagatcaatgatcttagccaattgtctttttcgcaccggcggttgtgc |
23078090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 122 - 365
Target Start/End: Complemental strand, 23073728 - 23073485
Alignment:
| Q |
122 |
ttccttctttaacttcaagaatcattaaccattacagaatgagagaggatataaaagcttataacctatctggtatgggttgtagtgctagtctaatctc |
221 |
Q |
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| T |
23073728 |
ttccttctttatcttcgcgaatcattaaccgttacaaaatgagacacgacgtaaaagtgtacaatctcaccggaatgggttgtagtgcaagtcttatatc |
23073629 |
T |
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| Q |
222 |
attagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaacatcagagtctcttagtacaaattggtattcaggaatcaat |
321 |
Q |
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| T |
23073628 |
attagatattgttaaaaacattttcaaatcacagagaaataagttagcacttttggtcacatcagagtctcttagtccaaattggtatactggcaatgat |
23073529 |
T |
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| Q |
322 |
aggtcaatgattcttgcaaattgtcttttccgtaccggcggttg |
365 |
Q |
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| T |
23073528 |
agatcaatgatcctagccaactgtcttttccgttccggcggttg |
23073485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 309
Target Start/End: Original strand, 23110707 - 23110820
Alignment:
| Q |
196 |
atgggttgtagtgctagtctaatctcattagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaacatcagagtctctta |
295 |
Q |
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| T |
23110707 |
atgggttgcagtgctagtcttatttcactagatattgttaaaaacattttcaaatcacaaagaaataagttagcacttttggtcacatcagagtctcttt |
23110806 |
T |
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| Q |
296 |
gtacaaattggtat |
309 |
Q |
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| T |
23110807 |
gtccaaattggtat |
23110820 |
T |
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