View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5249_low_1 (Length: 661)
Name: NF5249_low_1
Description: NF5249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5249_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 28933859 - 28933543
Alignment:
| Q |
1 |
ccaacactaacgaatgtggttacattcaattatttcatattctaaaattattacagtgtcaatgtgtcggtgccatgtctcgtgtttgtatcagtcccag |
100 |
Q |
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| T |
28933859 |
ccaacactgacgaatgtggttacattcaattatttcatattctaaaattattacagtgtcaatgtgtcggtgccatgtctcgtgtttgtatcagtcccag |
28933760 |
T |
|
| Q |
101 |
tgttacatagatctcaatatcatcaattaatattttctttaaaaaataagaaaattggaggatactcaaggatacacacccttctagaatattcaaatga |
200 |
Q |
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| T |
28933759 |
tgtta---agatctcaatatcatcaattaatattttctttaaaaaataagaaaattggaggatactcaaggatacacacccttctagaatattcaaatga |
28933663 |
T |
|
| Q |
201 |
atatcagtacaagatacgggtatgaaactgatacttgggcaattttagagtgtcagggcttaatagattagcactataatttgcatcagatgttacagat |
300 |
Q |
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| T |
28933662 |
atatcggtactagatacgggtatgaaactgatacttaggcaattttagagtgtcagggcttaatagattagcactataatttgcatcagatgttacagat |
28933563 |
T |
|
| Q |
301 |
atttagattataactgggca |
320 |
Q |
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|||||||||||||||||||| |
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| T |
28933562 |
atttagattataactgggca |
28933543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 366 - 642
Target Start/End: Complemental strand, 28933545 - 28933269
Alignment:
| Q |
366 |
gcaaatattgcagcaaccatatttataataaccagtcacttcgtaattctaagaagaagagaaactgacacatactcctgtaatttgtgaataaatctgt |
465 |
Q |
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| T |
28933545 |
gcaaatattgcagcaaccatatttataataaccagtcacttcgtaattctaagaagaagagaaactgagacatactcctgtaatttgtgaataaatctgt |
28933446 |
T |
|
| Q |
466 |
tgtcacttgtgtcataaatttccagcaagtcctctgccatctgccaatttcattagacatgtaaaataccaggccaataaaaggtgattcgaaagttaga |
565 |
Q |
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| T |
28933445 |
tgtcacttgtgtcataaatttccagcaagtcctctgccatctgccaatttcattagacatgtaaaataccaggccaataaaaggtgattcgaaagttaga |
28933346 |
T |
|
| Q |
566 |
tgacaaaataaactttttctatccacaatcatgaattagcacacaacaccaatattttttatggggcctgaggaaac |
642 |
Q |
| |
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| T |
28933345 |
tgacaaaataaaaattttctatccacaatcatgaattagcacacaacaccaatattttttatggggcctgaggaaac |
28933269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 504 - 626
Target Start/End: Complemental strand, 10187691 - 10187568
Alignment:
| Q |
504 |
atctgccaatttcattagacatgtaaaataccaggccaataaaaggtgattcgaaagttagatgacaaaataaactttttctatccacaatcatgaatta |
603 |
Q |
| |
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|||||||| |||||||| ||||||||||||||| |||||||||||||||||| ||| |||| || ||||| |||||| |||| |||| | |||| |||| |
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| T |
10187691 |
atctgccagtttcattaaacatgtaaaataccaagccaataaaaggtgattcagaagatagacga-aaaattaactttctctaaccacgaccatggatta |
10187593 |
T |
|
| Q |
604 |
--gcacacaacaccaatatttttta |
626 |
Q |
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||||| |||||||| |||||||| |
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| T |
10187592 |
gcgcacagaacaccaacatttttta |
10187568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 367 - 590
Target Start/End: Original strand, 35120501 - 35120725
Alignment:
| Q |
367 |
caaatattgcagcaaccatatttataataaccagtcacttcgtaattctaagaagaagagaaactgaca--catactcctgtaatttgtgaataaatctg |
464 |
Q |
| |
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|||||||| || ||| |||||||| |||||| ||| |||| ||||||||||||| |||||||||||| | |||||||||||| ||||| ||||| | |
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| T |
35120501 |
caaatatttcaccaaacatatttacaataactagtgacttggtaattctaagaacaagagaaactgagagacatactcctgtattttgttaataatgggg |
35120600 |
T |
|
| Q |
465 |
ttgtcacttgtgtcataaatttccagcaagtcctctgccatctgccaatttcattagacatgtaaaataccaggccaataaaaggtgattcgaaagttag |
564 |
Q |
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||||||||||| ||| | ||| ||||||| ||| ||||||||||||||||||| | ||||||||||||| ||||| |||||||||||| ||||||| |
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| T |
35120601 |
ttgtcacttgtttcaattctatcccgcaagtcatctaccatctgccaatttcattaaaaatgtaaaataccaagccaaaaaaaggtgattcagaagttag |
35120700 |
T |
|
| Q |
565 |
atgacaaaataaactttttctatcca |
590 |
Q |
| |
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|||| |||||| | ||| |||||||| |
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| T |
35120701 |
atga-aaaatatattttctctatcca |
35120725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 39828513 - 39828472
Alignment:
| Q |
14 |
atgtggttacattcaattatttcatattctaaaattattaca |
55 |
Q |
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| T |
39828513 |
atgtggttacattcaattatttcatattctcaaattattaca |
39828472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 26462657 - 26462716
Alignment:
| Q |
14 |
atgtggttacattcaattatttcatattctaaaattatta-cagtgtcaatgtgtcggtg |
72 |
Q |
| |
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||||| ||||||||||||||||||| |||| ||||||||| ||||||| | ||||||||| |
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| T |
26462657 |
atgtgattacattcaattatttcattttcttaaattattatcagtgtcgacgtgtcggtg |
26462716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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