View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5249_low_2 (Length: 464)
Name: NF5249_low_2
Description: NF5249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5249_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 54898065 - 54897811
Alignment:
| Q |
18 |
aggcacgttccaagagatggatgcacgcaagacgaaagaaacggagaatgtcacaaaagagagaagtaaaccatatgtgggacaccacatactctcagca |
117 |
Q |
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| T |
54898065 |
aggcacgtcccaagagatggatgcacacaagacgaaagaaacggagaatgtcacaaaagagagaagtaaaccatatgtgggacaccacatactctcagca |
54897966 |
T |
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| Q |
118 |
acaagaagaatcacacactacccacaaaagcagttgaataaaattgaattatgtggtcaacaacattttggtcattagaactagttgtggcgataaatat |
217 |
Q |
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| T |
54897965 |
acaagaagaatcacacactacccacaaaagcagttgaacaaaattgaattatgtggtcaacaacattttggtcattagaactagttggggcaataaatat |
54897866 |
T |
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| Q |
218 |
cacactcatacatttcatttaacacattcaatcaaacaagctaatttttgcaaga |
272 |
Q |
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| T |
54897865 |
cacacttatacatttcatttaacacattcaatcaaacaagctaatttttgcaaga |
54897811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 321 - 447
Target Start/End: Complemental strand, 54897811 - 54897685
Alignment:
| Q |
321 |
agtggctaacaaaaatttaagcacnnnnnnntcataattgagagttattagatagatgctaacatgttccttaaaaacacatgttaattaattcaattta |
420 |
Q |
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| T |
54897811 |
agtggctaacaaaaatttaagcacaaaaaaatcataattgagagttattagactgatactaacatgttccttaaagacacatgttaattaactcaattta |
54897712 |
T |
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| Q |
421 |
caagtattcgtctctaaaatcgttcat |
447 |
Q |
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| T |
54897711 |
gaagtatttgtctctaaaatcgttcat |
54897685 |
T |
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