View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5249_low_3 (Length: 368)
Name: NF5249_low_3
Description: NF5249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5249_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 14 - 353
Target Start/End: Original strand, 1046459 - 1046798
Alignment:
| Q |
14 |
atatgggaaaattgacttaaaagttatcgagtttatgcaattcaactaacatattacatannnnnnnnnnnnnnnnngcatgcagctttaggcctccgga |
113 |
Q |
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| T |
1046459 |
atatgggaaaattgacttaaaagttatcgagtttatgcaattcaactaacatattacatattttttatttttattttgcatgcagctttaggcctccgga |
1046558 |
T |
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| Q |
114 |
gatagttgagtctttcttggtggttgcttgaaaggtgaaagatcggctcttgaggatttggcagtgaagcgtgattttgtggatgagtttaaatactttt |
213 |
Q |
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| T |
1046559 |
gatagttgagtctttcttggtggttgcttgaaaggtgaaagatcggctcttgaggatttggcagtgaagcgtgattttgtggatgagtttaaatactttt |
1046658 |
T |
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| Q |
214 |
gtcaaaatctttaggcaataatacatttcatatgagctctactgcaacactgattagatacaccatgtatatagtggaatgcccaatttcataggtttct |
313 |
Q |
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| T |
1046659 |
gtcaaaatctttaggcaagaatacatttcatatgagctctactgcaacactgattagaaacaccatttatatagtggaatgcccaatttcataggtttct |
1046758 |
T |
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| Q |
314 |
agtgttatgctaatagtataaacaccatacagatatcttt |
353 |
Q |
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| T |
1046759 |
agtgttatgctaatagtataaacaccatacagatatcttt |
1046798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 1010922 - 1010842
Alignment:
| Q |
141 |
ttgaaaggtgaaagatcggctcttgaggatttggcagtgaagcgtgattttgtggatgagtttaaatacttttgtcaaaat |
221 |
Q |
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| T |
1010922 |
ttgaaaggtgaaagataggctcttgaggattttgcactgaagcatggttttatggatgattttagatattttaatcaaaat |
1010842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 1023955 - 1023878
Alignment:
| Q |
147 |
ggtgaaagatcggctcttgaggatttggcagtgaagcgtgattttgtggatgagtttaaatacttttgtcaaaatctt |
224 |
Q |
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| T |
1023955 |
ggtgaaagataagctcttgaggattttgcaatgaagcatggttttatggatgattttagatatttttattaaaatctt |
1023878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 40641946 - 40642050
Alignment:
| Q |
123 |
gtctttcttggtggttgcttg---aaaggtgaaagatcggctcttgaggatttggcagtgaagcgtgattttgtggatgagtttaaatacttttgtcaaa |
219 |
Q |
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| T |
40641946 |
gtctttcttggtggttacttgttgaaaggtgaaagataagctcttgaggatttttcactgaagcatggttttatggacgattttagatatttttgtcaaa |
40642045 |
T |
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| Q |
220 |
atctt |
224 |
Q |
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||||| |
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| T |
40642046 |
atctt |
40642050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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