View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5249_low_4 (Length: 342)
Name: NF5249_low_4
Description: NF5249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5249_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 34955764 - 34955447
Alignment:
| Q |
16 |
cacaaaaaccagagcaggtatgatcttttccataaattcttgctaatgtcgctataatattcattcatatctgatttcaaagctaaatcacaaaaatatc |
115 |
Q |
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| T |
34955764 |
cacaaaaaccagagcaggtatgatcttttccataaattcttgctaatgtcgctataatattcattcataactgatttcaaagctaaatcacaaaaatatc |
34955665 |
T |
|
| Q |
116 |
tagcatccctcttctttgtctgatacattaatacaatctcataataattaagagagaaaatataatgtatctaatttaacttatgacttataagatctat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34955664 |
tagcatccctcttctttgtctgatacattaatacaatctcataataattaagagagaaaatataatgtatctaatttaacttatgacttataagatctat |
34955565 |
T |
|
| Q |
216 |
aattataacttataagactttatctaaagttacacagatacgttgtgtaagagtgctgccaaagaggctttacaaacaacgagaactcgagaacaaatca |
315 |
Q |
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| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34955564 |
acttataacttataagactttatctaaagttacacagatatgttgtgtaagagtgctgccaaagaggctttacaaacaacgagaactcgagaacaaatca |
34955465 |
T |
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| Q |
316 |
tgactttctaagtataat |
333 |
Q |
| |
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|||||||||||||||||| |
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| T |
34955464 |
tgactttctaagtataat |
34955447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 34959809 - 34959508
Alignment:
| Q |
16 |
cacaaaaaccagagcaggtatgatcttttccataaattcttgctaatgtcgctataatattcattcatatctgatttcaaagctaaatcacaaaaatatc |
115 |
Q |
| |
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|||||||||||||||| || |||||||||||||||||| |||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34959809 |
cacaaaaaccagagcatgtgtgatcttttccataaattattgctaatatggctataatattcattcttatctgatttcaaagctaaatcacaaaaatatc |
34959710 |
T |
|
| Q |
116 |
tagcatccctcttctttgtc------tgatacattaatacaatctcataataattaagagagaaaatata--atgtatctaatttaacttatgacttata |
207 |
Q |
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| |||||||||||| |||| |||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
34959709 |
caacatccctcttctctgtcttcagatgatacattaatgcaatctcataatccttaagagagaaaatataatatgtatctaatttaact------ttata |
34959616 |
T |
|
| Q |
208 |
agatctat----aattataacttataagactttatctaaagttacacagatacgttgtgtaagagtgctgccaaagaggctttacaaacaacgagaactc |
303 |
Q |
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|| ||||| | |||||||||| ||||| || ||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
34959615 |
agttctattttaacttataacttaaaagaccttgtctaaaggtatacagatacgttgtgtaagagtgctgccaaagaggctttgcaaacaacaagaactc |
34959516 |
T |
|
| Q |
304 |
gagaacaa |
311 |
Q |
| |
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|||||||| |
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| T |
34959515 |
gagaacaa |
34959508 |
T |
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