View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5249_low_6 (Length: 259)
Name: NF5249_low_6
Description: NF5249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5249_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 53403903 - 53403676
Alignment:
| Q |
13 |
cagagacaatgaaggtatgtatgtatatatgcagcaatagtatacaccagtattcgtcaattgaaaaataggcaaaatgctttcttggtcacaagcgttt |
112 |
Q |
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| T |
53403903 |
cagagacattgaaggtatgtatgtat----gcagcaatagtatacaccagtattcgtcaattgaaaaataggcaaaatgctttcttggtcacaagcgttt |
53403808 |
T |
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| Q |
113 |
gaacactctatttgggcacacat--aaacactttatgttgggattctggctataagaaagtgttgtgtctctcagactcaacatgatgaaattgaaaggt |
210 |
Q |
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| T |
53403807 |
gaacactctatttgggcacacatacacacactttatgttgggattctggctataagaaagtgttgtgtctctcagactcaacatgatgaaattgaaatgt |
53403708 |
T |
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| Q |
211 |
attgggttgggcctgactgtgggtgtgtattt |
242 |
Q |
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| T |
53403707 |
attgggttgggcctgactgtgggtgtgtattt |
53403676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 53375099 - 53375273
Alignment:
| Q |
13 |
cagagacaatgaaggtatgtatgtatatatgcagcaatagtatacaccagtattcgtcaattgaaaaataggcaaaatgctttcttggtcacaagcgttt |
112 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53375099 |
cagagacaatgaaggtatgtatgtat----gcagctatagtatacaccagtatttgtcaattgaaaaataggcaaaatgctttcttggtcacaagcgttt |
53375194 |
T |
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| Q |
113 |
gaacactctatttgggcacacataaacactttatgttgggattctggctataagaaagtgttgtgtctctcagactcaa |
191 |
Q |
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| T |
53375195 |
gaacactttatttgggcacacatacacactttatgttgggattctggctataagaaagtgttgtgtctctcagactcaa |
53375273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 53375974 - 53376023
Alignment:
| Q |
193 |
atgatgaaattgaaaggtattgggttgggcctgactgtgggtgtgtattt |
242 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
53375974 |
atgatgaaatttaaaggcattgggttgggcctgactgtgggtgtgtattt |
53376023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 191
Target Start/End: Complemental strand, 11392358 - 11392324
Alignment:
| Q |
157 |
tggctataagaaagtgttgtgtctctcagactcaa |
191 |
Q |
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| T |
11392358 |
tggctataagaaagtgttgtgtctctcagactcaa |
11392324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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