View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5249_low_8 (Length: 248)
Name: NF5249_low_8
Description: NF5249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5249_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 38 - 230
Target Start/End: Complemental strand, 37219697 - 37219499
Alignment:
| Q |
38 |
aattagaaatacactcgatttttctttttaatagaccatactaactcattgaaattgtcacttgaaaagatggaacatc-gacgttaagaaaaacatgtc |
136 |
Q |
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| T |
37219697 |
aattagatatacactggattttt-tttttaatagaccatactaactcattgaaattgtcactcgagaagatggaacatcagacgttaagaaaaacatgcc |
37219599 |
T |
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| Q |
137 |
attcaaatcaacaccataccaactga-------ttacaaacactcgcatgttaagtaagttcacaaggatttatagaaatacacgttcatacatataaaa |
229 |
Q |
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| T |
37219598 |
attcaaatcaacacc-taccacctgaagtgggtttacaaacactcgcatgttaagtaagttcacaaggatttatagaaatacacgttcatacatataaaa |
37219500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 37219754 - 37219720
Alignment:
| Q |
10 |
attatactagacaatattcataaaataaaattaga |
44 |
Q |
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| T |
37219754 |
attatactagacaatattcataaaataaaattaga |
37219720 |
T |
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