View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5250-Insertion-1 (Length: 705)

Name: NF5250-Insertion-1
Description: NF5250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5250-Insertion-1
NF5250-Insertion-1
[»] chr8 (6 HSPs)
chr8 (60-251)||(38863232-38863417)
chr8 (338-648)||(26130084-26130396)
chr8 (548-648)||(2199638-2199739)
chr8 (480-527)||(2156006-2156053)
chr8 (394-462)||(7406600-7406668)
chr8 (153-193)||(38842741-38842781)
[»] chr1 (4 HSPs)
chr1 (351-625)||(24886603-24886874)
chr1 (386-457)||(32839199-32839270)
chr1 (386-445)||(27308716-27308775)
chr1 (394-440)||(40583029-40583075)
[»] chr4 (10 HSPs)
chr4 (403-648)||(48804131-48804375)
chr4 (311-591)||(26070680-26070960)
chr4 (478-591)||(42912507-42912618)
chr4 (386-648)||(6020479-6020745)
chr4 (327-459)||(8069544-8069671)
chr4 (480-585)||(51702244-51702351)
chr4 (546-648)||(8069745-8069848)
chr4 (386-441)||(42912451-42912506)
chr4 (386-433)||(51702153-51702200)
chr4 (386-432)||(53591595-53591641)
[»] chr2 (7 HSPs)
chr2 (347-620)||(20262585-20262855)
chr2 (386-460)||(28772056-28772130)
chr2 (527-641)||(4880582-4880694)
chr2 (394-467)||(32184031-32184103)
chr2 (386-433)||(26062898-26062945)
chr2 (386-433)||(26068637-26068684)
chr2 (519-591)||(28771928-28772000)
[»] chr3 (2 HSPs)
chr3 (328-648)||(51925686-51926004)
chr3 (391-460)||(28690235-28690304)
[»] chr7 (3 HSPs)
chr7 (408-647)||(26285866-26286104)
chr7 (391-453)||(12385869-12385931)
chr7 (506-555)||(22991930-22991979)
[»] chr6 (1 HSPs)
chr6 (394-433)||(6002586-6002625)
[»] chr5 (3 HSPs)
chr5 (386-457)||(15195965-15196036)
chr5 (522-565)||(32653331-32653374)
chr5 (386-455)||(32653411-32653480)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 4e-74; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 60 - 251
Target Start/End: Original strand, 38863232 - 38863417
Alignment:
Q  60 aaggtggacacagacgacaacggttagttgaacagctagctagnnnnnnnnnnnnnnnactacaactatgcataactaacatatatcaacatgcatgttg 159  Q
    |||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||    
T  38863232 aaggtggacacagacgacaacggttagttgaacagctagctagatatatata------actacaactatgcataactaacatatatcaacatgcatgttg 38863325  T
Q  160 tcttataatgatgaacaaattgatcaacatgcattatatcttcatctaggatccacctatagatataggatgttggtttaattaatgaaaaa 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38863326 tcttataatgatgaacaaattgatcaacatgcattatatcttcatctaggatccacctatagatataggatgttggtttaattaatgaaaaa 38863417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 338 - 648
Target Start/End: Original strand, 26130084 - 26130396
Alignment:
Q  338 gattaatttggctcgaaagggcgctttggcttgctgatgnnnnnnnaaggagctgttggatcttggatcgtttctgtgttggtagacgattcatacacct 437  Q
    |||| ||||||| ||||||||||||||||||||||||||       | ||||||||||||||||| ||||||||||| |||| ||||||||||||| |||    
T  26130084 gattgatttggcccgaaagggcgctttggcttgctgatgtttttt-agggagctgttggatcttgaatcgtttctgttttggcagacgattcatacgcct 26130182  T
Q  438 accttgatactctaaacactcactttgcgtannnnnnnnnagttcggtttcgtatccacacgtgggttcgttgggttatct---gtagtagtgttgttta 534  Q
    |||| |||||||||||||| ||||  | ||          |||| ||||||||||||||||||||||||| |||| | |||   |||||| |||||||||    
T  26130183 acctagatactctaaacacccactcagtgt--ttttttgcagtttggtttcgtatccacacgtgggttcgctgggctgtctgcagtagtactgttgttta 26130280  T
Q  535 gagttgttttc-tttaccacttgtgtactaatttgttgtattacccgttaggatttgaat-tgtggttttctggatgaggttcatgccaccccattttgt 632  Q
    ||||||||||| |||||||||| |||||| | |||| |||  ||||||| || ||||| | | ||||| ||||| | || |||||| | |||  | ||||    
T  26130281 gagttgttttcatttaccacttttgtactgaattgtcgtaccacccgtttgggtttgagtctatggttatctgggtcagattcatgtcccccagtcttgt 26130380  T
Q  633 acttcctttttatttt 648  Q
    ||||||||||||||||    
T  26130381 acttcctttttatttt 26130396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 548 - 648
Target Start/End: Complemental strand, 2199739 - 2199638
Alignment:
Q  548 taccacttgtgtactaatttgttgtattacccgttaggatttgaatt-gtggttttctggatgaggttcatgccaccccattttgtacttcctttttatt 646  Q
    ||||||||||||||| ||||| ||||| |||||||||| ||||| || |||||||||||| | ||||||||||| |||  | ||||| ||||||||||||    
T  2199739 taccacttgtgtactgatttgctgtatcacccgttagggtttgagtttgtggttttctgggtcaggttcatgccccccagtcttgtatttcctttttatt 2199640  T
Q  647 tt 648  Q
    ||    
T  2199639 tt 2199638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 480 - 527
Target Start/End: Complemental strand, 2156053 - 2156006
Alignment:
Q  480 ttcggtttcgtatccacacgtgggttcgttgggttatctgtagtagtg 527  Q
    ||||||||||||  |||||||||||||||||| |||||||| ||||||    
T  2156053 ttcggtttcgtactcacacgtgggttcgttggattatctgtggtagtg 2156006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 462
Target Start/End: Complemental strand, 7406668 - 7406600
Alignment:
Q  394 tggatcttggatcgtttctgtgttggtagacgattcatacacctaccttgatactctaaacactcactt 462  Q
    ||||||||||| ||  |||||||||||||||||||||||| ||    | ||| ||||||||||||||||    
T  7406668 tggatcttggaacgcctctgtgttggtagacgattcatacgccagtttagatgctctaaacactcactt 7406600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 38842741 - 38842781
Alignment:
Q  153 catgttgtcttataatgatgaacaaattgatcaacatgcat 193  Q
    |||||||||||||||||||  | ||||||||||||||||||    
T  38842741 catgttgtcttataatgatataaaaattgatcaacatgcat 38842781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 3e-53; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 351 - 625
Target Start/End: Original strand, 24886603 - 24886874
Alignment:
Q  351 cgaaagggcgctttggcttgctgatgnnnnnnnaaggagctgttggatcttggatcgtttctgtgttggtagacgattcatacacctaccttgatactct 450  Q
    ||||||||||||||||||||||||||       | |||||||||||| |||| |||||||||||||||||||||||||||||  |||||||| |||||||    
T  24886603 cgaaagggcgctttggcttgctgatgttttt--atggagctgttggaccttgaatcgtttctgtgttggtagacgattcatattcctaccttaatactct 24886700  T
Q  451 aaacactcactttgcgtannnnnnnnnagttcggtttcgtatccacacgtgggttcgttgggttatctgtagtagtgttgtttagagttgttttctttac 550  Q
    ||||  ||||| |||||          |||||||||||||||||| ||||||||||| |||| | |||||||||||||||||||||||||||||||||||    
T  24886701 aaactttcactatgcgt--ttttttgcagttcggtttcgtatccatacgtgggttcgctgggctgtctgtagtagtgttgtttagagttgttttctttac 24886798  T
Q  551 cacttgtgtactaatttgttgtattacccgttaggatttgaat-tgtggttttctggatgaggttcatgccacccc 625  Q
    | ||||||| || ||||||||||| | |||||||| |||| ||  |||||| ||||| | ||||||||||| ||||    
T  24886799 cgcttgtgttctgatttgttgtatcatccgttagggtttgtatcggtggttatctgggtcaggttcatgccccccc 24886874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 386 - 457
Target Start/End: Complemental strand, 32839270 - 32839199
Alignment:
Q  386 ggagctgttggatcttggatcgtttctgtgttggtagacgattcatacacctaccttgatactctaaacact 457  Q
    |||| ||||||| |||||||||||||||||| |||||| ||||||||| |||| || ||| |||||||||||    
T  32839270 ggagttgttggaacttggatcgtttctgtgtaggtagatgattcatacgcctatctagatgctctaaacact 32839199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 445
Target Start/End: Complemental strand, 27308775 - 27308716
Alignment:
Q  386 ggagctgttggatcttggatcgtttctgtgttggtagacgattcatacacctaccttgat 445  Q
    ||||||| |||| ||||| |||||| |||||||| ||||||||||||| ||||| |||||    
T  27308775 ggagctgctggaacttgggtcgtttgtgtgttggcagacgattcatacgcctactttgat 27308716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 394 - 440
Target Start/End: Complemental strand, 40583075 - 40583029
Alignment:
Q  394 tggatcttggatcgtttctgtgttggtagacgattcatacacctacc 440  Q
    |||| |||||||||||||| |||||| ||||||||||||| ||||||    
T  40583075 tggaacttggatcgtttctatgttggcagacgattcatacgcctacc 40583029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 1e-43; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 403 - 648
Target Start/End: Original strand, 48804131 - 48804375
Alignment:
Q  403 gatcgtttctgtgttggtagacgattcatacacctaccttgatactctaaacactcactttgcgtannnnnnnnnagttcggtttcgtatccacacgtgg 502  Q
    |||||||| |||||||| ||||||||||||| |||||||||||||||||| |||||||| ||| |          |||||||||||||||||||||||||    
T  48804131 gatcgtttatgtgttggcagacgattcatacgcctaccttgatactctaaccactcactctgcatttttttttgcagttcggtttcgtatccacacgtgg 48804230  T
Q  503 gttcgttgggttatctgtagtagtgttgtttagagttgttttctttaccacttgtgtactaatttgttgtattacccgttaggatttgaattgtggtttt 602  Q
    ||||| |||| | || |||||||||||||||| | ||||||| | | |||||||||||||| |||||||||| |||| ||||| ||||| |||||||| |    
T  48804231 gttcgctgggctgtccgtagtagtgttgtttataattgttttttcttccacttgtgtactattttgttgtatcaccctttagggtttgagttgtggttat 48804330  T
Q  603 ctggatgaggttcatgccaccccattttgtacttcctttttatttt 648  Q
    || | | | ||||||||| ||| ||  |||| ||||||||||||||    
T  48804331 ctaggtcaagttcatgcc-cccaatcatgtatttcctttttatttt 48804375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 311 - 591
Target Start/End: Original strand, 26070680 - 26070960
Alignment:
Q  311 tttgtttattaatctagacttcgatcagattaatttggctcgaaagggcgctttggcttgctgatgnnnnnnnaaggagctgttggatcttggatcgttt 410  Q
    |||||| ||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||| ||||       | |||| ||||||| ||||| ||||||    
T  26070680 tttgttcattgatctggacttcgatcagattgatttggcccgaaagggcgctttggcttgccgatgtttttt-agggagttgttggaccttgggtcgttt 26070778  T
Q  411 ctgtgttggtagacgattcatacacctaccttg--atactctaaacactcactttgcgtannnnnnnnnagttcggtttcgtatccacacgtgggttcgt 508  Q
    |||||||||  ||||||||| |  ||||||||   ||||| | |||| ||||| |||||          | ||||| |||||||||||| |||||||||     
T  26070779 ctgtgttggcggacgattcaaatgcctaccttataatactttgaacattcactctgcgt-cttttttgcatttcggcttcgtatccacatgtgggttcgc 26070877  T
Q  509 tgggttatctgtagtagtgttgtttagagttgttttctttaccacttgtgtactaatttgttgtattacccgttaggatttga 591  Q
    || | |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||| |||||    
T  26070878 tgcgctatccgtagtagtgttgtttagagttgttttctttaccacttgtgtactgatttgttgtatcccccgttagggtttga 26070960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 478 - 591
Target Start/End: Original strand, 42912507 - 42912618
Alignment:
Q  478 agttcggtttcgtatccacacgtgggttcgttgggttatctgtagtagtgttgtttagagttgttttctttaccacttgtgtactaatttgttgtattac 577  Q
    |||||||||||| |||||||||||| |||| ||| || || || |||||||||||||||||||||||||||||||||  |||||||||||||||||| ||    
T  42912507 agttcggtttcgcatccacacgtggattcgctggattgtccgtggtagtgttgtttagagttgttttctttaccact--tgtactaatttgttgtataac 42912604  T
Q  578 ccgttaggatttga 591  Q
    |||||||| |||||    
T  42912605 ccgttagggtttga 42912618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 386 - 648
Target Start/End: Original strand, 6020479 - 6020745
Alignment:
Q  386 ggagctgttggatcttggatcgtttctgtgttggtagacgattcatacacctaccttgatactctaaacactcactttgc---gtannnnnnnnnagttc 482  Q
    |||||| ||||| |||||| ||||||| |||||||||||||||||||||||||| | ||||||||||||| ||||| |||    ||         || ||    
T  6020479 ggagcttttggaccttggaacgtttctatgttggtagacgattcatacacctacttggatactctaaacattcactctgcattttattttttgcaag-tc 6020577  T
Q  483 ggtttcgtatccacacgtgggttcgttgggttatctgtagtagtgttgtttagagttgttttctttaccacttgtgtactaatttgttgtattacccgtt 582  Q
    ||||||| ||||||||||||||| | |||  ||||  |||||||||||||||||||| || |||| ||||||| |||||| |||| |||||| | || ||    
T  6020578 ggtttcgcatccacacgtgggtttgctggactatccatagtagtgttgtttagagttattgtcttaaccacttatgtactgatttattgtatcatccatt 6020677  T
Q  583 aggatttgaat-tgtggttttctggatgaggttcatgccacccca-ttttgtacttcctttttatttt 648  Q
    ||| ||||| | |||| || ||||| | |||||| |||| || || ||||||| |||||||| |||||    
T  6020678 agggtttgagtctgtgattctctgggtcaggttcgtgcccccgcagttttgtaattccttttcatttt 6020745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 327 - 459
Target Start/End: Original strand, 8069544 - 8069671
Alignment:
Q  327 gacttcgatcagattaatttggctcgaaagggcgctttggcttgctgatgnnnnnnnaaggagctgttggatcttggatcgtttctgtgttggtagacga 426  Q
    |||||||||| |||| ||||||||||||||||| |||| |||||||| |        | |||| ||||||| |||| |||||||||||||||  ||||||    
T  8069544 gacttcgatcggattgatttggctcgaaagggcactttcgcttgctgtt-----tttagggagttgttggaccttgaatcgtttctgtgttgacagacga 8069638  T
Q  427 ttcatacacctaccttgatactctaaacactca 459  Q
    ||||||| ||| |||||||||| || |||||||    
T  8069639 ttcatacgcctgccttgatactttagacactca 8069671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 480 - 585
Target Start/End: Original strand, 51702244 - 51702351
Alignment:
Q  480 ttcggtttcgtatccacacgtgggttcgttgggttatctgtagtagtgttgtttagagttgttttc--tttaccacttgtgtactaatttgttgtattac 577  Q
    |||||||||| ||||| ||||||||||| ||| ||  | || | ||||||||||||||||||||||  || |||||||||||||| ||||| ||||| ||    
T  51702244 ttcggtttcgaatccatacgtgggttcgctggattgcccgtggaagtgttgtttagagttgttttctattcaccacttgtgtactgatttgatgtatcac 51702343  T
Q  578 ccgttagg 585  Q
     |||||||    
T  51702344 tcgttagg 51702351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 546 - 648
Target Start/End: Original strand, 8069745 - 8069848
Alignment:
Q  546 tttaccacttgtgtactaatttgttgtattacccgttaggatttgaatt-gtggttttctggatgaggttcatgccaccccattttgtacttccttttta 644  Q
    ||||||||| ||||||  ||||||||||| |||||||||| ||||| || |||||| || || | ||||||||||| |||  | ||||||||||||||||    
T  8069745 tttaccactagtgtacatatttgttgtatcacccgttagggtttgagttggtggttatccgggtcaggttcatgccccccagtcttgtacttccttttta 8069844  T
Q  645 tttt 648  Q
    ||||    
T  8069845 tttt 8069848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 386 - 441
Target Start/End: Original strand, 42912451 - 42912506
Alignment:
Q  386 ggagctgttggatcttggatcgtttctgtgttggtagacgattcatacacctacct 441  Q
    |||||||||||| ||||||||| ||||||||| | |||||||||||||||||||||    
T  42912451 ggagctgttggaccttggatcgcttctgtgttagcagacgattcatacacctacct 42912506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 433
Target Start/End: Original strand, 51702153 - 51702200
Alignment:
Q  386 ggagctgttggatcttggatcgtttctgtgttggtagacgattcatac 433  Q
    ||||||| |||| |||||||||||||||| |||| |||||||||||||    
T  51702153 ggagctgctggaccttggatcgtttctgttttggcagacgattcatac 51702200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 53591641 - 53591595
Alignment:
Q  386 ggagctgttggatcttggatcgtttctgtgttggtagacgattcata 432  Q
    ||||||| |||| || || ||||||||||||||||||||||||||||    
T  53591641 ggagctgctggaactcgggtcgtttctgtgttggtagacgattcata 53591595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 1e-43; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 347 - 620
Target Start/End: Complemental strand, 20262855 - 20262585
Alignment:
Q  347 ggctcgaaagggcgctttggcttgctgatgnnnnnnnaaggagctgttggatcttggatcgtttctgtgttggtagacgattcatacacctaccttgata 446  Q
    ||||||||||||||||||||||||||| ||       | |||||||||||| |||| |||||||||||||||| ||||||||||||| |||||||| |||    
T  20262855 ggctcgaaagggcgctttggcttgctgctgttttt--agggagctgttggaccttgaatcgtttctgtgttggcagacgattcatacgcctaccttaata 20262758  T
Q  447 ctctaaacactcactttgcgtannnnnnnnnagttcggtttcgtatccacacgtgggttcgttgggttatctgtagtagtgttgtttagagttgttttct 546  Q
    ||||||||  ||||| |||  |         |||||  ||||||||||| ||||||||||| |||||| || |||||| |||||||||||||||||||||    
T  20262757 ctctaaactttcactctgc--atttttttgcagttcaatttcgtatccatacgtgggttcgctgggttgtccgtagtattgttgtttagagttgttttct 20262660  T
Q  547 ttaccacttgtgtactaatttgttgtattacccgttaggatttgaat-tgtggttttctggatgaggttcatgcc 620  Q
    ||||||||||| | || ||||||||||| || ||||||| |||| ||  |||||| ||||| | |||||||||||    
T  20262659 ttaccacttgtattctgatttgttgtatcactcgttagggtttgtatcggtggttatctggttcaggttcatgcc 20262585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 386 - 460
Target Start/End: Complemental strand, 28772130 - 28772056
Alignment:
Q  386 ggagctgttggatcttggatcgtttctgtgttggtagacgattcatacacctaccttgatactctaaacactcac 460  Q
    |||||||||||| |||||||  |||||||| ||| | ||||||||||||||||||||||||||||||||| ||||    
T  28772130 ggagctgttggaccttggatgatttctgtgctggcaaacgattcatacacctaccttgatactctaaacattcac 28772056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 527 - 641
Target Start/End: Original strand, 4880582 - 4880694
Alignment:
Q  527 gttgtttagagttgttttctttaccacttgtgtactaatttgttgtattacccgttaggatttga-attgtggttttctggatgaggttcatgccacccc 625  Q
    |||||||| |||||||||||||||||||  |||||||| ||||||||| |||||||| | |||||  ||||||||||  |  | ||||||||||| |||     
T  4880582 gttgtttaaagttgttttctttaccact--tgtactaacttgttgtatcacccgttaaggtttgaggttgtggttttacgagtcaggttcatgcc-ccca 4880678  T
Q  626 attttgtacttccttt 641  Q
    || |||||||||||||    
T  4880679 atcttgtacttccttt 4880694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 467
Target Start/End: Complemental strand, 32184103 - 32184031
Alignment:
Q  394 tggatcttggatcgtttctgtgttggtagacgattcatacacctaccttgatactctaaacactcactttgcgt 467  Q
    |||| ||||||||||||||||||||  ||| ||||||||  |||| ||||||||||| |||||||||| |||||    
T  32184103 tggaccttggatcgtttctgtgttgacagatgattcatatgccta-cttgatactctgaacactcactctgcgt 32184031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 433
Target Start/End: Complemental strand, 26062945 - 26062898
Alignment:
Q  386 ggagctgttggatcttggatcgtttctgtgttggtagacgattcatac 433  Q
    |||| ||||||| |||||||||||| |||||||| |||||||||||||    
T  26062945 ggagttgttggaacttggatcgtttatgtgttggcagacgattcatac 26062898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 433
Target Start/End: Complemental strand, 26068684 - 26068637
Alignment:
Q  386 ggagctgttggatcttggatcgtttctgtgttggtagacgattcatac 433  Q
    |||| ||||||| |||||||||||| |||||||| |||||||||||||    
T  26068684 ggagttgttggaacttggatcgtttatgtgttggcagacgattcatac 26068637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 519 - 591
Target Start/End: Complemental strand, 28772000 - 28771928
Alignment:
Q  519 gtagtagtgttgtttagagttgttttctttaccacttgtgtactaatttgttgtattacccgttaggatttga 591  Q
    ||||||||||||||| |||||||||| |||||||||  ||| |  |||||||| || ||| |||||| |||||    
T  28772000 gtagtagtgttgtttggagttgttttgtttaccactcttgtgcagatttgttgaatcacctgttagggtttga 28771928  T

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Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 328 - 648
Target Start/End: Complemental strand, 51926004 - 51925686
Alignment:
Q  328 acttcgatcagattaatttggctcgaaagggcgctttggcttgctgatgnnnnnnnaaggagctgttggatcttggatcgtttctgtgttggtagacgat 427  Q
    ||||||||  |||| ||||||| |||||||||||||||||||||||| |       | |||||||||||| ||||| |||||| |||||||| |||||||    
T  51926004 acttcgattggattgatttggcccgaaagggcgctttggcttgctgaagtttttt-agggagctgttggaccttgggtcgtttatgtgttggcagacgat 51925906  T
Q  428 tcatacacctaccttgatactctaaacactcactttgcgtannnnnnnnnagttcggtttcgtatccacacgtgggttcgttgggttatctgtagtagtg 527  Q
    |||||| ||||||||||||||||||||| |||   ||| |          |||| ||||||||||||||| |||||||||||||| |  |||||||||||    
T  51925905 tcatacgcctaccttgatactctaaacattcatgctgcat-tttttttccagtttggtttcgtatccacatgtgggttcgttgggctggctgtagtagtg 51925807  T
Q  528 ttgtttagagttg-ttttctttaccacttgtgtactaatttgttgtattacccgttaggatttgaat-tgtggttttctggatgaggttcatgccacccc 625  Q
    ||||||  || || |||| ||||||||   |||||| ||||||||||| | | |||||| ||||| | ||||||| | ||| | ||||||||||| ||||    
T  51925806 ttgttttaagctgtttttatttaccacacttgtactgatttgttgtatcatctgttagggtttgagtctgtggttat-tgggtcaggttcatgcc-cccc 51925709  T
Q  626 attttgtacttcctttttatttt 648  Q
    |  ||||||||||||||||||||    
T  51925708 aacttgtacttcctttttatttt 51925686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 391 - 460
Target Start/End: Original strand, 28690235 - 28690304
Alignment:
Q  391 tgttggatcttggatcgtttctgtgttggtagacgattcatacacctaccttgatactctaaacactcac 460  Q
    ||||||| |||||||||||| |||||||| || |||||||||| | ||||| |||||| |||||| ||||    
T  28690235 tgttggaccttggatcgtttatgtgttggcaggcgattcatacgcttacctcgatactataaacattcac 28690304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 408 - 647
Target Start/End: Complemental strand, 26286104 - 26285866
Alignment:
Q  408 tttctgtgttggtagacgattcatacacctaccttgatactctaaacactcactttgcgtannnnnnnnnagttcggtttcgtatccacacgtgggttcg 507  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||||||  ||||| |||||          |||| ||||| ||||||||||| ||||||     
T  26286104 tttctgtgttggcagacgattcatacgcctactttgatactctaaactttcactctgcgt--ttttttgcagtttggttttgtatccacacgagggttca 26286007  T
Q  508 ttgggttatctgtagtagtgttgtttagagttgttttctttaccacttgtgtactaatttgttgtattacccgttaggatttgaat-tgtggttttctgg 606  Q
     ||   | ||||||||||| |||||||||||||||||||| |||||||||||| | ||||||||||| ||  |||||| ||||| | ||||||| ||| |    
T  26286006 ctgatctgtctgtagtagtcttgtttagagttgttttcttaaccacttgtgtaatgatttgttgtatcacatgttagggtttgagtctgtggttctctag 26285907  T
Q  607 atgaggttcatgccaccccattttgtacttcctttttattt 647  Q
     | ||||||||||| ||  || |||||||||||||| ||||    
T  26285906 gtcaggttcatgccccctaatcttgtacttccttttcattt 26285866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 391 - 453
Target Start/End: Original strand, 12385869 - 12385931
Alignment:
Q  391 tgttggatcttggatcgtttctgtgttggtagacgattcatacacctaccttgatactctaaa 453  Q
    ||||||| ||| |||||||||||||||||||||| |||||||| |||| ||| ||||||||||    
T  12385869 tgttggaacttagatcgtttctgtgttggtagactattcatacgcctatctttatactctaaa 12385931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 22991979 - 22991930
Alignment:
Q  506 cgttgggttatctgtagtagtgttgtttagagttgttttctttaccactt 555  Q
    ||||||||| || |||||||||||||||| ||||||||||||||||||||    
T  22991979 cgttgggttgtccgtagtagtgttgtttaaagttgttttctttaccactt 22991930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 433
Target Start/End: Complemental strand, 6002625 - 6002586
Alignment:
Q  394 tggatcttggatcgtttctgtgttggtagacgattcatac 433  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  6002625 tggatcttgaattgtttctgtgttggtagacgattcatac 6002586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 457
Target Start/End: Original strand, 15195965 - 15196036
Alignment:
Q  386 ggagctgttggatcttggatcgtttctgtgttggtagacgattcatacacctaccttgatactctaaacact 457  Q
    |||| ||||||| |||| |||||||||||||||| || |||||||||| |||| || ||| |||| ||||||    
T  15195965 ggagttgttggaacttgaatcgtttctgtgttggcagccgattcatacgcctatctagatgctctcaacact 15196036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 565
Target Start/End: Complemental strand, 32653374 - 32653331
Alignment:
Q  522 gtagtgttgtttagagttgttttctttaccacttgtgtactaat 565  Q
    |||||||||||||||||| |||| | ||||||||||||||||||    
T  32653374 gtagtgttgtttagagttattttttataccacttgtgtactaat 32653331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 455
Target Start/End: Complemental strand, 32653480 - 32653411
Alignment:
Q  386 ggagctgttggatcttggatcgtttctgtgttggtagacgattcatacacctaccttgatactctaaaca 455  Q
    ||||||| ||||| ||||||||||| ||| |||| | ||||||||||| | ||| |||||||||| ||||    
T  32653480 ggagctgctggatattggatcgtttatgtattggcatacgattcatactcatactttgatactctgaaca 32653411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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