View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5250-Insertion-11 (Length: 133)
Name: NF5250-Insertion-11
Description: NF5250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5250-Insertion-11 |
 | |
|
| [»] scaffold0196 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0196 (Bit Score: 118; Significance: 1e-60; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 24107 - 24232
Alignment:
| Q |
8 |
ggtatgacccatcaaaagcttttgttcttgctgcgttcaatgccttcttagaccctttcttagctctcttataatttttctaaatatttgtacttgtaca |
107 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24107 |
ggtatgacccatcaaaagcttgtgttcttgctgcgttcaatgccttcttagaccctttcttagctctcttataattttcctaaatatttgtacttgtaca |
24206 |
T |
|
| Q |
108 |
catataccacactttaaaacatcccc |
133 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
24207 |
catataccacactttaaaacatcccc |
24232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 14771840 - 14771941
Alignment:
| Q |
19 |
tcaaaagcttttgttcttgctgcgttcaatgccttcttagaccctttcttagctctcttataatttttctaaatatttgtacttgtacacatataccaca |
118 |
Q |
| |
|
|||||||||| ||||| | || |||||||| |||||| | | | |||||||||||||||||||||| ||||| | |||||||| ||||| ||||||||| |
|
|
| T |
14771840 |
tcaaaagcttgtgttcgttttgtgttcaatgtcttcttcgcctcgttcttagctctcttataattttcctaaaaacttgtacttttacacctataccaca |
14771939 |
T |
|
| Q |
119 |
ct |
120 |
Q |
| |
|
|| |
|
|
| T |
14771940 |
ct |
14771941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 14769159 - 14769238
Alignment:
| Q |
42 |
gttcaatgccttcttagaccctttcttagctctcttataatttttctaaatatttgtacttgtacacatataccacactt |
121 |
Q |
| |
|
|||||||| |||||| | | | |||||||||||||||||||||| ||||| | |||||||| ||||| |||||||||||| |
|
|
| T |
14769159 |
gttcaatgtcttcttcgcctcgttcttagctctcttataattttcctaaaaacttgtacttttacacctataccacactt |
14769238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 15327209 - 15327108
Alignment:
| Q |
19 |
tcaaaagcttttgttcttgctgcgttcaatgccttcttagaccctttcttagctctcttataatttttctaaatatttgtacttgtacacatataccaca |
118 |
Q |
| |
|
|||||||||| ||||| | || |||||||| |||||| | | | |||||||||||||||||||||| ||||| | |||||||| ||||| ||||||||| |
|
|
| T |
15327209 |
tcaaaagcttgtgttcgttttgtgttcaatgtcttcttcgcctcgttcttagctctcttataattttcctaaaaacttgtacttttacacctataccaca |
15327110 |
T |
|
| Q |
119 |
ct |
120 |
Q |
| |
|
|| |
|
|
| T |
15327109 |
ct |
15327108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University