View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5250-Insertion-3 (Length: 460)
Name: NF5250-Insertion-3
Description: NF5250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5250-Insertion-3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 6 - 460
Target Start/End: Complemental strand, 45387273 - 45386818
Alignment:
| Q |
6 |
caacaaatcacaaccaatcatatttatgactttagagatagttatgttgaagtcaaacgtttttaatgatctaaggatcatcgataattgactgtgtnnn |
105 |
Q |
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| T |
45387273 |
caacaaatcacaaccaatcatatttatgactttagagatagttatgttaaagtcaaacgtttttaatgatctaaggatcatcgataattgacggtgttaa |
45387174 |
T |
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| Q |
106 |
nnnnnn-ttatacatgaattttacatgccataaaatacaatgggaaaccttaatgctaaatcttgagctataagctaaaccacatgaagagcacccagat |
204 |
Q |
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| T |
45387173 |
aaaaaaattatacatgaattttacatgccataaaatacaatgggaaaccttaatgctaaatcttgagctataagctaaaccacatgaagagcacccagat |
45387074 |
T |
|
| Q |
205 |
gaagaaagnnnnnnnncaagaaaacataaaaaccaacctcaata---ttcctcaatgttagaacaggtaagaggcataaggcgccaataacaattaatag |
301 |
Q |
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| T |
45387073 |
gaagaaa---aaaaaacaagaaaacataaaaaccaacctcaataatattcctcaatgttagaacaggtaagaggcataaggcgccaataacaattaatag |
45386977 |
T |
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| Q |
302 |
tgttattaacgtaagagcnnnnnnnnntatagagaagtttatttgcgttggagtgacccattggaaaggttttacgattgtgaagcaaccacaatgagaa |
401 |
Q |
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| T |
45386976 |
tgttattaacgtaagagcaaaaaaaaatatagagaagtttgtttgcgttggagtgacccattggaaaggttttacgattgtgaagcaaccacaatgagaa |
45386877 |
T |
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| Q |
402 |
ggaaaggatcgaaggaaaggacaatgttgtttgttgtgattgcggcagttgaatgatta |
460 |
Q |
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| T |
45386876 |
ggaaaggatcgaaggaaaggacaatgttgtttgttgtgattgtggtagttgaatgatta |
45386818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 8783048 - 8782979
Alignment:
| Q |
6 |
caacaaatcacaaccaatcatatttatgactttagagatagttatg-ttgaagtcaaacgtttttaatgatc |
76 |
Q |
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| T |
8783048 |
caacaaatcacaaccaatcatatatatgacttttgaagtagttatgattaaagtcaaa--tttttaatgatc |
8782979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 16230756 - 16230827
Alignment:
| Q |
6 |
caacaaatcacaaccaatcatatttatgactttagagatagttatg-ttgaagtcaaacgtttttaatgatc |
76 |
Q |
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| T |
16230756 |
caacaaatcacaaccaatcatatgtttgattttagaagtagttatgattaaagtcaaacattttaaatgatc |
16230827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 26762938 - 26762864
Alignment:
| Q |
10 |
aaatcacaaccaatcatatttatgactttagagatagttatg-ttgaagtcaaacgtttttaatgatctaaggat |
83 |
Q |
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| T |
26762938 |
aaatcacaatcaatcatttgtatgactttagaagtaattatgattaaagtcaaacgtttttactgatctgaggat |
26762864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 30011737 - 30011805
Alignment:
| Q |
6 |
caacaaatcacaaccaatcatatttatgactttagagatagttatg-ttgaagtcaaacgtttttaatg |
73 |
Q |
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| T |
30011737 |
caacaaatcaaaatcaatcatatgtgtgattttagaagtagttatgattgaagtcaaacatttttaatg |
30011805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 24547717 - 24547777
Alignment:
| Q |
10 |
aaatcacaaccaatcatatttatgactttagagatagttatg-ttgaagtcaaacgttttt |
69 |
Q |
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| T |
24547717 |
aaatcacaaccaatcatatctgtgattttagaagtagttatgattgaagtcaaacattttt |
24547777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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