View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5250-Insertion-4 (Length: 387)
Name: NF5250-Insertion-4
Description: NF5250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5250-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 8 - 387
Target Start/End: Complemental strand, 42050928 - 42050549
Alignment:
| Q |
8 |
tatcattatcataattcattcatatatttcactattcacattcnnnnnnnnnnnnnaaagaacctacaccccttctttctcaaggtttgatatctttttt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42050928 |
tatcattatcataattcattcatatatttcactattcacattctttttctttttttaaagaacctacaccccttctttctcaaggtttgatatctttttt |
42050829 |
T |
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| Q |
108 |
gcattctctctttctttggccccaaacattaacaccacatcattctttctcct-ctccatctccatcagatgctggtgagtggagttagaagttgacann |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42050828 |
gcattctctctttctttggccccaaacattaacaccacatcattctttcttcttctccatctccatcagttgctggtgagtggagttagaagttgacatc |
42050729 |
T |
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| Q |
207 |
nnnnnnnnnnnnnnnnaagccgttttagcgccaccatttcatgagataatcttttcctgaaatctagctccaaacttaacaacagataaaggagagagaa |
306 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42050728 |
tctctctctctctct-aagccgttttagcgccaccatttcatgagataagcttttcctgaaatctagctccaaacttaacaacagataaaggagagagaa |
42050630 |
T |
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| Q |
307 |
actattgaaaagatgatttattagggctatagtttcatttcatcaactcttaaaactctcattttccttccttcactttca |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42050629 |
actattgaaaagatgatttattagggctatagtttcatttcatcaactcttaaaactctcattttccttccttcactttca |
42050549 |
T |
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