View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5250-Insertion-5 (Length: 380)

Name: NF5250-Insertion-5
Description: NF5250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5250-Insertion-5
NF5250-Insertion-5
[»] chr7 (9 HSPs)
chr7 (32-377)||(28614635-28614973)
chr7 (224-377)||(28612920-28613067)
chr7 (224-378)||(28621232-28621380)
chr7 (233-358)||(29269797-29269916)
chr7 (37-181)||(28612714-28612858)
chr7 (232-359)||(29279196-29279317)
chr7 (306-359)||(29275363-29275416)
chr7 (235-364)||(29282170-29282293)
chr7 (232-362)||(29287626-29287750)
[»] chr1 (3 HSPs)
chr1 (240-357)||(49145021-49145132)
chr1 (240-362)||(4235423-4235539)
chr1 (246-360)||(49149565-49149673)
[»] chr5 (1 HSPs)
chr5 (249-345)||(35625845-35625935)


Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 32 - 377
Target Start/End: Complemental strand, 28614973 - 28614635
Alignment:
Q  32 agcatacttaaaaggattgagtagagttatggaaacgttaccatggactaatgaaagccaaccaaatgaagagccatgacaggttataaatttgatggat 131  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28614973 agcatacttaaaaggattgagtagagttatggaaccgttaccatggactaatgaaagccaaccaaatgaagagccatgacaggttataaatttgatggat 28614874  T
Q  132 gaaaattgaatggagtactctttgtggcttagaaggctatacaaggatctaccgctctcggattcgattgggacgctcatgatcatgggtgctggtatag 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||    
T  28614873 gaaaattgaatggagtactctttgtggcttagaaggctatacaaggatctactgctatcggatttgattgggacgctcatgatcatgggtggtggtatag 28614774  T
Q  232 taatcctaaattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactgaacctgaacctaacatgatctatgtgttcttc 331  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||    
T  28614773 taatcataaattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactga------acctaacatgatctatgtgttcttc 28614680  T
Q  332 taacttgtcaagaaccaaattaagaggaagttctgcgaagttagcc 377  Q
    ||||||| |||||||||||||||||||||||||| | |||||||||    
T  28614679 taacttg-caagaaccaaattaagaggaagttcttctaagttagcc 28614635  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 224 - 377
Target Start/End: Original strand, 28612920 - 28613067
Alignment:
Q  224 tggtatagtaatcctaaattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactgaacctgaacctaacatgatctatg 323  Q
    ||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||  | |    ||||||||||||||||||    
T  28612920 tggtatattactcctaaattgatggctttgatggttaagctttgcaactgatagccaagtcttgcacacgaca--gca----aacctaacatgatctatg 28613013  T
Q  324 tgttcttctaacttgtcaagaaccaaattaagaggaagttctgcgaagttagcc 377  Q
    |||||||| ||||||||||||||||||  || ||| |||||| | |||||||||    
T  28613014 tgttcttccaacttgtcaagaaccaaaccaacaggtagttcttccaagttagcc 28613067  T

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Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 224 - 378
Target Start/End: Complemental strand, 28621380 - 28621232
Alignment:
Q  224 tggtatagtaatcctaaattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactgaacctgaacctaacatgatctatg 323  Q
    ||||||| |||| ||||||||||| ||||||||||| | |||||||||||| |||||| | |||||||||||||  |||||      ||||||||| |||    
T  28621380 tggtatattaatgctaaattgatgattttgatggttcaactttgcaactgaacgccaatttttgcacacgacaccaaacct------aacatgatcgatg 28621287  T
Q  324 tgttcttctaacttgtcaagaaccaaattaagaggaagttctgcgaagttagcct 378  Q
    |||||||| || ||||||||||||||| |||||||||||||| | ||||||||||    
T  28621286 tgttcttccaatttgtcaagaaccaaactaagaggaagttcttctaagttagcct 28621232  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 233 - 358
Target Start/End: Complemental strand, 29269916 - 29269797
Alignment:
Q  233 aatcctaaattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactgaacctgaacctaacatgatctatgtgttcttct 332  Q
    ||||||||||||||| |||| ||||||||||||||||| |||| | ||| |||||||||| ||||  |||||      |||||||||||||||||||||     
T  29269916 aatcctaaattgatgatttttatggttaagctttgcaattgataggcaactcttgcacaccacaccaaacct------aacatgatctatgtgttcttcc 29269823  T
Q  333 aacttgtcaagaaccaaattaagagg 358  Q
    |||| ||||||||||||| |||||||    
T  29269822 aactcgtcaagaaccaaactaagagg 29269797  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 28612714 - 28612858
Alignment:
Q  37 acttaaaaggattgagtagagttatggaaacgttaccatggactaatgaaagccaaccaaatgaagagccatgacaggttataaatttgatggatgaaaa 136  Q
    ||||||||||||| | ||||||||||  | | ||| | |  |||||||||| ||||||||||||||||||  ||||  || ||| |||||||||| ||||    
T  28612714 acttaaaaggattaaatagagttatgacatcattatcgtccactaatgaaatccaaccaaatgaagagccccgacacattgtaattttgatggataaaaa 28612813  T
Q  137 ttgaatggagtactctttgtggcttagaaggctatacaaggatct 181  Q
    | |||||| |||||||||||| ||||||| |||||| ||||||||    
T  28612814 tggaatggggtactctttgtgacttagaatgctatataaggatct 28612858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 359
Target Start/End: Complemental strand, 29279317 - 29279196
Alignment:
Q  232 taatcctaaattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactgaacctgaacctaacatgatctatgtgttcttc 331  Q
    |||||||||||||||| |||| |||||||||| ||||||||||   |||| |||| ||||| ||||  |||||      |||||||||||||||||||||    
T  29279317 taatcctaaattgatgatttttatggttaagcgttgcaactgaaaaccaattcttacacaccacaccaaacct------aacatgatctatgtgttcttc 29279224  T
Q  332 taacttgtcaagaaccaaattaagagga 359  Q
     ||||| |||||||| ||| ||||||||    
T  29279223 caacttatcaagaacaaaactaagagga 29279196  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 306 - 359
Target Start/End: Complemental strand, 29275416 - 29275363
Alignment:
Q  306 aacctaacatgatctatgtgttcttctaacttgtcaagaaccaaattaagagga 359  Q
    |||||||||||||||||||||||||| ||||| |||||||||||| ||||||||    
T  29275416 aacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagagga 29275363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 364
Target Start/End: Complemental strand, 29282293 - 29282170
Alignment:
Q  235 tcctaaattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactgaacctgaacctaacatgatctatgtgttcttctaa 334  Q
    ||||||||||||| |||| |||||||||||| ||| ||||| ||||| |||| ||||| |||      | |||||||||||  ||| | ||| |||| ||    
T  29282293 tcctaaattgatgatttttatggttaagcttagcagctgatagccaattcttacacacaaca------ccgaacctaacatagtctgtttgtacttccaa 29282200  T
Q  335 cttgtcaagaaccaaattaagaggaagttc 364  Q
    ||| |||||||||||| |||||||||||||    
T  29282199 cttttcaagaaccaaactaagaggaagttc 29282170  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 362
Target Start/End: Complemental strand, 29287750 - 29287626
Alignment:
Q  232 taatcctaaattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactgaacctgaacctaacatgatctatgtgttcttc 331  Q
    |||||||||||||||| |||| |||||||||||| |||| |||| ||||| |||| ||||| |||      |  ||||||||||  ||| | ||| ||||    
T  29287750 taatcctaaattgatgatttttatggttaagcttagcaattgatagccaattcttacacaccaca------ccaaacctaacatagtctgtttgtacttc 29287657  T
Q  332 taacttgtcaagaaccaaattaagaggaagt 362  Q
     ||||| |||||||||||| |||||||||||    
T  29287656 caacttttcaagaaccaaactaagaggaagt 29287626  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 357
Target Start/End: Complemental strand, 49145132 - 49145021
Alignment:
Q  240 aattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactgaacctgaacctaacatgatctatgtgttcttctaacttgt 339  Q
    |||||||| ||||||||| ||| |||||||| |||||||||||||||||||||  |||  |||  |||    |||| |||||||||||||||||||||||    
T  49145132 aattgatgattttgatggctaaactttgcaattgatcgccaagtcttgcacacagcaccaaac--gaa----acataatctatgtgttcttctaacttgt 49145039  T
Q  340 caagaaccaaattaagag 357  Q
    |||||| |||||||||||    
T  49145038 caagaatcaaattaagag 49145021  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 362
Target Start/End: Complemental strand, 4235539 - 4235423
Alignment:
Q  240 aattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactgaacctgaacctaacatgatctatgtgttcttctaacttgt 339  Q
    |||||||| ||||||||||||| |||||||| |||||||||| ||||||||||  |||  ||||       |||||||| ||||||||||||||||||||    
T  4235539 aattgatgattttgatggttaaactttgcaattgatcgccaactcttgcacacagcaccaaacca------aacatgatatatgtgttcttctaacttgt 4235446  T
Q  340 caagaaccaaattaagaggaagt 362  Q
    |||| | |||| |||||||||||    
T  4235445 caagtatcaaactaagaggaagt 4235423  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 360
Target Start/End: Complemental strand, 49149673 - 49149565
Alignment:
Q  246 tggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactgaacctgaacctaacatgatctatgtgttcttctaacttgtcaagaa 345  Q
    |||| |||||||||||||||||||| |||||||||| ||||||||||  |||  ||||       ||||||||||||||||||||||||| |||||||||    
T  49149673 tggtcttgatggttaagctttgcaattgatcgccaactcttgcacacagcaccaaacca------aacatgatctatgtgttcttctaacatgtcaagaa 49149580  T
Q  346 ccaaattaagaggaa 360  Q
    |||||  ||||||||    
T  49149579 ccaaaccaagaggaa 49149565  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 345
Target Start/End: Original strand, 35625845 - 35625935
Alignment:
Q  249 ttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactgaacctgaacctaacatgatctatgtgttcttctaacttgtcaagaa 345  Q
    ||||||||||||| |||||||| |||||||||  ||||||||||| ||      | ||||| ||||||||||||  |||||||||||||||||||||    
T  35625845 ttttgatggttaaactttgcaattgatcgccagttcttgcacacggca------ccgaaccaaacatgatctattcgttcttctaacttgtcaagaa 35625935  T

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