View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5250-Insertion-6 (Length: 380)
Name: NF5250-Insertion-6
Description: NF5250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5250-Insertion-6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 7 - 380
Target Start/End: Complemental strand, 44371003 - 44370610
Alignment:
| Q |
7 |
atgactaaggattgttctagatagattaagtacctggaagctgccatggatcaaacttatacaaatcaacttctttgacaacgggaacagaaatagattg |
106 |
Q |
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| T |
44371003 |
atgactaaggattgttctagctagattaagtacctggaagctgccatggatcaaacttatacaaatcaacttctttgacaacgggaacagaaatagattg |
44370904 |
T |
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| Q |
107 |
accagcacatttgcgacacaagtagtgattcaccaattcttcatcagtagggtgaaatctgaaaccaggtggtaattctaattcaccttgcattcttgtg |
206 |
Q |
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| T |
44370903 |
accagcacatttgcgacacaagtagtgattcaccaattcttcatcagtagggtgaaatctgaaaccaggtggtaattctaattcaccttgcattcttgtg |
44370804 |
T |
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| Q |
207 |
t------------taataatactagtttgactgaaag--------gttgactatgttgttgatgataattgttgttgttgatgatgttctttgctctgct |
286 |
Q |
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| T |
44370803 |
ttcttgttctttgtgttaatactagtttgactgaaaggttgaaacgttgactatgttattgaagaagataattgttgttgatgatgttctttgctctgct |
44370704 |
T |
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| Q |
287 |
atgttctgagttggaagttgtgtgatgagacagagagtcaatgaaatggttatgttttataggagagtgttagaaagaattaggacacgtgcgt |
380 |
Q |
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| T |
44370703 |
atgttctgagttggaagttgtgtgatgagacaaagagtcaatgaaatggttatgttttataggagagtgttagaaagaattaagacacgtgcgt |
44370610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 180
Target Start/End: Original strand, 54270143 - 54270180
Alignment:
| Q |
143 |
ttcttcatcagtagggtgaaatctgaaaccaggtggta |
180 |
Q |
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| T |
54270143 |
ttcttcatcagttgggtgaaacctgaaaccaggtggta |
54270180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 34 - 201
Target Start/End: Complemental strand, 39492619 - 39492452
Alignment:
| Q |
34 |
aagtacctggaagctgccatggatcaaacttatacaaatcaacttctttgacaacgggaacagaaatagattgaccagcacatttgcgacacaagtagtg |
133 |
Q |
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| T |
39492619 |
aagtacctggaagatgccatggatcaaacttatacaaatcaatttctttgataataggaacagcaattggaagggaagcacactttctacacaagtagtg |
39492520 |
T |
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| Q |
134 |
attcaccaattcttcatcagtagggtgaaatctgaaaccaggtggtaattctaattcaccttgcattc |
201 |
Q |
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| T |
39492519 |
attcacaagctcatcatcagtagggtgaaatctgaagccaggtggtaactctaatgctccttgcattc |
39492452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 40728709 - 40728677
Alignment:
| Q |
143 |
ttcttcatcagtagggtgaaatctgaaaccagg |
175 |
Q |
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| T |
40728709 |
ttcttcatcagtagggtgaaatctaaaaccagg |
40728677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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