View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5250-Insertion-7 (Length: 377)
Name: NF5250-Insertion-7
Description: NF5250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5250-Insertion-7 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 377
Target Start/End: Complemental strand, 50095750 - 50095381
Alignment:
| Q |
8 |
attaaagtgtgacgttcgcggtacatgaaatattcagccagagctgcacctgtataaggagcgaggtagtgtaatgcagctggagaatgaatcaaattgt |
107 |
Q |
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| T |
50095750 |
attaaagtgtgacgttcgcggtacatgaaatattcagccagagttgcacctatataaggagcgagatagtgtactgtagctggagaatgaatcaaactgt |
50095651 |
T |
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| Q |
108 |
aagcctgaaatgaacaaaaagaaaccagaatgtagcttgagtaaatatttaattggtgcaaaattgtgggtggcctatttcaacaattcacaaactcaaa |
207 |
Q |
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| T |
50095650 |
aagccataaatgaacaaaaagaaaccagaatgtagcttgagtaaatatttaattggtgcaaaattgtgggtggcctatttcaacaattcacaaactcaaa |
50095551 |
T |
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| Q |
208 |
agacgttgttatgtaaccagtatgttagcaggtcgggttacagatacaggtctaagtaatgttaagaacataaacctcatccttctatcacattccacag |
307 |
Q |
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| T |
50095550 |
agacgttgttatgtaaccagtatgttagcaggtcgggttacagatacaggtctaagtaatgttaagaacataaacctcatccttctatcacattccacag |
50095451 |
T |
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| Q |
308 |
accacagttactctgaacaaattccagtgaatttcacaagtcattaggtcatcccaaagagcataaatat |
377 |
Q |
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| T |
50095450 |
atcacagttactctgaacaaattccagtgaatttcacaagtcattaggtcatcccaaagagcataaatat |
50095381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 1422492 - 1422405
Alignment:
| Q |
8 |
attaaagtgtgacgttcgcggtacatgaaatattcagccagagctgcacctgtataaggagcgaggtagtgtaatgcagctggagaat |
95 |
Q |
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| T |
1422492 |
attaaagtgtgacgttcacggtacataaaatattcagccagagctgcacctgtataaggagcgaggtattgtaatgtagatggagaat |
1422405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 6747898 - 6747818
Alignment:
| Q |
8 |
attaaagtgtgacgttcgcggtacatgaaatattcagccagagctgcacctgtataaggagcgaggtagtgtaatgcagct |
88 |
Q |
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| T |
6747898 |
attaaagtgtgacgttcacggtacataaaatattcagccagagctgcacctgtataaggagcgaggtattgtaatgtagct |
6747818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 21838592 - 21838512
Alignment:
| Q |
8 |
attaaagtgtgacgttcgcggtacatgaaatattcagccagagctgcacctgtataaggagcgaggtagtgtaatgcagct |
88 |
Q |
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| T |
21838592 |
attaaagtgtgacgttcacagtacataaaatattcagctagagctgcacctgtataaggagtgaggtattgtaatgtagct |
21838512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 235279 - 235204
Alignment:
| Q |
8 |
attaaagtgtgacgttcgcggtacatgaaatattcagccagagctgcacctgtataaggagcgaggtagtgtaatg |
83 |
Q |
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| T |
235279 |
attaaagtatgccgttcgcggtacataaaatactcagccagggctgctcccgtataaggagcgaggtattgtaatg |
235204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 45533335 - 45533289
Alignment:
| Q |
49 |
agctgcacctgtataaggagcgaggtagtgtaatgcagctggagaat |
95 |
Q |
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| T |
45533335 |
agctgcacctgtataaggagcgaggtattgtaatgtagctggagaat |
45533289 |
T |
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