View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5250-Insertion-8 (Length: 230)

Name: NF5250-Insertion-8
Description: NF5250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5250-Insertion-8
NF5250-Insertion-8
[»] chr8 (1 HSPs)
chr8 (7-230)||(27024813-27025036)
[»] chr2 (1 HSPs)
chr2 (7-230)||(10118126-10118349)
[»] chr4 (1 HSPs)
chr4 (7-230)||(19256566-19256789)
[»] chr1 (1 HSPs)
chr1 (7-230)||(33020586-33020809)
[»] chr6 (1 HSPs)
chr6 (169-230)||(4890870-4890931)


Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 27025036 - 27024813
Alignment:
Q  7 attttcatcatcagcaaacttgtttaaatcaaatccaatatcagcaagaagatttagatcaatatccaacactatttgcccttgaggtggttcttcaact 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27025036 attttcatcatcagcaaacttgtttaaatcaaatccaatatcagcaagaagatttagatcaatatccaacactatttgcccttgaggtggttcttcaact 27024937  T
Q  107 gcctcttccactaaatcttcaactaccatctccactgcttgtgggtgcagtttggaccccgctgtgtctgcagtatcaaactcataatcaactttccctt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27024936 gcctcttccactaaatcttcaactaccatctccactgcttgtgggtgcagtttggaccccgctgtgtctgcagtatcaaactcataatcaactttccctt 27024837  T
Q  207 caagtgaatcctcaactaccatct 230  Q
    ||||||||||||||||||||||||    
T  27024836 caagtgaatcctcaactaccatct 27024813  T

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Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 10118126 - 10118349
Alignment:
Q  7 attttcatcatcagcaaacttgtttaaatcaaatccaatatcagcaagaagatttagatcaatatccaacactatttgcccttgaggtggttcttcaact 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10118126 attttcatcatcagcaaacttgtttaaatcaaatccaatatcagcaagaagatttagatcaatatccaacactatttgcccttgaggtggttcttcaact 10118225  T
Q  107 gcctcttccactaaatcttcaactaccatctccactgcttgtgggtgcagtttggaccccgctgtgtctgcagtatcaaactcataatcaactttccctt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10118226 gcctcttccactaaatcttcaactaccatctccactgcttgtgggtgcagtttggaccccgctgtgtctgcagtatcaaactcataatcaactttccctt 10118325  T
Q  207 caagtgaatcctcaactaccatct 230  Q
    ||||||||||||||||||||||||    
T  10118326 caagtgaatcctcaactaccatct 10118349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 19256789 - 19256566
Alignment:
Q  7 attttcatcatcagcaaacttgtttaaatcaaatccaatatcagcaagaagatttagatcaatatccaacactatttgcccttgaggtggttcttcaact 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19256789 attttcatcatcagcaaacttgtttaaatcaaatccaatatcagcaagaagatttagatcaatatccaacactatttgcccttgaggtggttcttcaact 19256690  T
Q  107 gcctcttccactaaatcttcaactaccatctccactgcttgtgggtgcagtttggaccccgctgtgtctgcagtatcaaactcataatcaactttccctt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19256689 gcctcttccactaaatcttcaactaccatctccactgcttgtgggtgcagtttggaccccactgtgtctgcagtatcaaactcataatcaactttccctt 19256590  T
Q  207 caagtgaatcctcaactaccatct 230  Q
    ||||||||||||||||||||||||    
T  19256589 caagtgaatcctcaactaccatct 19256566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 33020809 - 33020586
Alignment:
Q  7 attttcatcatcagcaaacttgtttaaatcaaatccaatatcagcaagaagatttagatcaatatccaacactatttgcccttgaggtggttcttcaact 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33020809 attttcatcatcagcaaacttgtttaaatcaaatccaatatcagcaagaagatttagatcaatatccaacactatttgcccttgaggtggttcttcaact 33020710  T
Q  107 gcctcttccactaaatcttcaactaccatctccactgcttgtgggtgcagtttggaccccgctgtgtctgcagtatcaaactcataatcaactttccctt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33020709 gcctcttccactaaatcttcaactaccatctccactgcttgtgggtgcagtttggacccctctgtgtctgcagtatcaaactcataatcaactttccctt 33020610  T
Q  207 caagtgaatcctcaactaccatct 230  Q
    ||||||||||||||||||||||||    
T  33020609 caagtgaatcctcaactaccatct 33020586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 4890870 - 4890931
Alignment:
Q  169 tgtgtctgcagtatcaaactcataatcaactttcccttcaagtgaatcctcaactaccatct 230  Q
    ||||||| || ||||||||||||||||||||| |||||| ||| |||||||||||| |||||    
T  4890870 tgtgtctacaatatcaaactcataatcaacttccccttccagtaaatcctcaactatcatct 4890931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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