View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5250_high_10 (Length: 274)
Name: NF5250_high_10
Description: NF5250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5250_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 28435207 - 28435323
Alignment:
| Q |
19 |
aattcatgtaatacatgaaacacttccaccaaagtgatctcgcaaaaattcttcgtgttctccaaggcagctataaaagcttcatatctttcacgtattg |
118 |
Q |
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| T |
28435207 |
aattcatgtaatacatgaaaca-ttccaccaaagtgatctcacacaaattcttcgtgttctccaaggcagctataaaagcttcatatctttcacgtattg |
28435305 |
T |
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| Q |
119 |
ttacaagaattatttcct |
136 |
Q |
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| T |
28435306 |
ttacaagaattatttcct |
28435323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 140 - 265
Target Start/End: Original strand, 28435378 - 28435503
Alignment:
| Q |
140 |
ttctttgtaactcgaattctcattaaatattcaacatttgcatgcttcaaatcctttcatctcctccatattcttcatttaggtaatctcattttgctat |
239 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
28435378 |
ttctttgtaactcaaactctcattaaatattcaacatttgcatgcttcaaatcctttcatctcctccataatcttcatttaggtaatctcattttactat |
28435477 |
T |
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| Q |
240 |
tgttgttttagagtcacaggttctgc |
265 |
Q |
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| T |
28435478 |
tgttgttttagagtcacggtttctgc |
28435503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 227
Target Start/End: Complemental strand, 53968948 - 53968854
Alignment:
| Q |
133 |
tccttcattctttgtaactcgaattctcattaaatattcaacatttgcatgcttcaaatcctttcatctcctccatattcttcatttaggtaatc |
227 |
Q |
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| T |
53968948 |
tccttcattctttgtaactcgaactctcttattaaattcaacactttcatacttcaaatcctttcagctcctgcatattcttccattaggtaatc |
53968854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 53969109 - 53969049
Alignment:
| Q |
73 |
gtgttctccaaggcagctataaaagcttcatatctttcacgtattgttacaagaattattt |
133 |
Q |
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| T |
53969109 |
gtgttctccaagacagctataaaagcgtcacatctttcatgtaccgttacaagtattattt |
53969049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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