View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5250_high_11 (Length: 259)

Name: NF5250_high_11
Description: NF5250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5250_high_11
NF5250_high_11
[»] chr2 (10 HSPs)
chr2 (1-259)||(33095204-33095462)
chr2 (146-259)||(33095145-33095258)
chr2 (1-60)||(33095102-33095161)
chr2 (149-252)||(33095046-33095149)
chr2 (217-259)||(33103811-33103853)
chr2 (5-60)||(33095412-33095467)
chr2 (217-259)||(33103721-33103763)
chr2 (14-57)||(33103722-33103765)
chr2 (146-196)||(33095451-33095501)
chr2 (14-60)||(33103812-33103858)


Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 33095204 - 33095462
Alignment:
Q  1 accttctcctggaaatcaaccaccatatgtaccaataataccaccaaaaactccttctccaatctatagtcctccaaatactccttatacacctcccaaa 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33095204 accttctcctgaaaatcaaccaccatatgtaccaataataccaccaaaaactccttctccaatctatagtcctcctaatactccttatacacctcccaaa 33095303  T
Q  101 agtactcctccctcacctaatcaacctccctatgttcctccccctccaaaaactccttcacctatttacaatcctccaaatgttccttatactcctccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33095304 agtactcctccctcacctaatcaacctccctatgttcctacacctccaaaaactccttcacctatttacaatcctccaaatgttccttatactcctccaa 33095403  T
Q  201 aaacaccatctcctcacaatcaaccaccttatgtaccaattacaccaccaaaaactcct 259  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33095404 aaacaccatctcctcgcaatcaaccaccttatgtaccaattacaccaccaaaaactcct 33095462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 146 - 259
Target Start/End: Original strand, 33095145 - 33095258
Alignment:
Q  146 ccaaaaactccttcacctatttacaatcctccaaatgttccttatactcctccaaaaacaccatctcctcacaatcaaccaccttatgtaccaattacac 245  Q
    ||||| || ||||| ||||||  ||||||||| |||||||||||||||||||| |||||||| |||||| | ||||||||||| ||||||||||| | ||    
T  33095145 ccaaagacaccttctcctattatcaatcctcctaatgttccttatactcctccgaaaacaccttctcctgaaaatcaaccaccatatgtaccaataatac 33095244  T
Q  246 caccaaaaactcct 259  Q
    ||||||||||||||    
T  33095245 caccaaaaactcct 33095258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 33095102 - 33095161
Alignment:
Q  1 accttctcctggaaatcaaccaccatatgtaccaataataccaccaaaaactccttctcc 60  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||| || ||||||||    
T  33095102 accttctcctggaaatcaaccaccatatgtgccaataacaccaccaaagacaccttctcc 33095161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 33095046 - 33095149
Alignment:
Q  149 aaaactccttcacctatttacaatcctccaaatgttccttatactcctccaaaaacaccatctcctcacaatcaaccaccttatgtaccaattacaccac 248  Q
    ||||| |||||||||||| | | |||||| |||||||| ||||||||||||||   ||| ||||||   ||||||||||| ||||| ||||| |||||||    
T  33095046 aaaacaccttcacctattcatagtcctcccaatgttccctatactcctccaaaggtaccttctcctggaaatcaaccaccatatgtgccaataacaccac 33095145  T
Q  249 caaa 252  Q
    ||||    
T  33095146 caaa 33095149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 33103811 - 33103853
Alignment:
Q  217 caatcaaccaccttatgtaccaattacaccaccaaaaactcct 259  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  33103811 caatcaaccaccttatgttccaattacaccaccaaaaactcct 33103853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 33095412 - 33095467
Alignment:
Q  5 tctcctggaaatcaaccaccatatgtaccaataataccaccaaaaactccttctcc 60  Q
    |||||| | ||||||||||| ||||||||||| | |||||||||||||||||||||    
T  33095412 tctcctcgcaatcaaccaccttatgtaccaattacaccaccaaaaactccttctcc 33095467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 33103721 - 33103763
Alignment:
Q  217 caatcaaccaccttatgtaccaattacaccaccaaaaactcct 259  Q
    |||||||||||| ||||| ||||||||||||||||||||||||    
T  33103721 caatcaaccaccatatgtgccaattacaccaccaaaaactcct 33103763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 33103722 - 33103765
Alignment:
Q  14 aatcaaccaccatatgtaccaataataccaccaaaaactccttc 57  Q
    ||||||||||||||||| ||||| | ||||||||||||||||||    
T  33103722 aatcaaccaccatatgtgccaattacaccaccaaaaactccttc 33103765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 33095451 - 33095501
Alignment:
Q  146 ccaaaaactccttcacctatttacaatcctccaaatgttccttatactcct 196  Q
    |||||||||||||| |||||| ||| |||||| |||||||| |||||||||    
T  33095451 ccaaaaactccttctcctattcacactcctcctaatgttccatatactcct 33095501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 33103812 - 33103858
Alignment:
Q  14 aatcaaccaccatatgtaccaataataccaccaaaaactccttctcc 60  Q
    ||||||||||| ||||| ||||| | |||||||||||||||||||||    
T  33103812 aatcaaccaccttatgttccaattacaccaccaaaaactccttctcc 33103858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University