View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5250_high_12 (Length: 251)
Name: NF5250_high_12
Description: NF5250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5250_high_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 37828087 - 37827853
Alignment:
| Q |
17 |
tgcaattataccttaaaattgacttactcatttctgatctaaaggacaaaacttgaaagcgataagagccaaaccatgtaggcatgtaggcgactatgaa |
116 |
Q |
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| T |
37828087 |
tgcaattataccttaaa-ttgatttactcatttctgatctaaaggacaaaacttgaaagcgataagagccaaaccatgtaggcatgtaggcgactatgaa |
37827989 |
T |
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| Q |
117 |
gcctaggttttcctatgcaaaataatatgcataaaattaatgatat-ttttaactgtatgatgataaatcacaatttatttataaaaaagtcttatccaa |
215 |
Q |
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| T |
37827988 |
gcctaggttttcctatgcataataatatgcataaaattaatgatattttttaactgtatgatgataaatcacaatttatttataaaaaagtcttatccaa |
37827889 |
T |
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| Q |
216 |
aacaacacatttttgtctacgtaatctataaagaga |
251 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
37827888 |
aacaacacatttttgtctacgtaatctataaagaga |
37827853 |
T |
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