View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5250_high_14 (Length: 238)
Name: NF5250_high_14
Description: NF5250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5250_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 1720815 - 1720608
Alignment:
| Q |
18 |
acaaaatgctagtaaaaatgcatcaagccattcctctttgttgttgtctacaactacaatcggtaacaaacgcgcggttctatgtggagttacttacaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1720815 |
acaaaatgctagtaaaaatgcatcaagccattcctctttgttgttgtctacaactacaatcggtaacaaacgcgcggttctatgtggagttacttacaga |
1720716 |
T |
|
| Q |
118 |
agaagacggtacatgctcaagggaaccgttaatgatgttgttaacatgaaaaaactactgactaataattttgcattcccaatagaatccatacgcgtcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1720715 |
agaagacggtacatgctcaagggaaccgttaatgatgttgttaacatgaaaaaactactgactaataattttgcattcccaatagaatccatacgcgtcc |
1720616 |
T |
|
| Q |
218 |
tcacaggt |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
1720615 |
tcacaggt |
1720608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 18372753 - 18372915
Alignment:
| Q |
33 |
aaatgcatcaagccattcctctttgttgttgtctacaactacaatcggtaacaaacgcgcggttctatgtggagttacttacagaagaagacggtacatg |
132 |
Q |
| |
|
|||||||||| |||||||||| | ||||||||||||||| | | | ||||||| | | ||||||||||||||| |||| ||| ||||| | |||| | |
|
|
| T |
18372753 |
aaatgcatcaggccattcctcgtcgttgttgtctacaacaatcacccgtaacaagcacatggttctatgtggagtaacttgcag-cgaagatgttacaag |
18372851 |
T |
|
| Q |
133 |
ctcaagggaaccgttaatgatgttgttaacatgaaaaaactactgactaataattttgcattccc |
197 |
Q |
| |
|
||||| |||||| |||||||||| ||||||||| |||| ||| | ||| |||||||||||||| |
|
|
| T |
18372852 |
ctcaa-ggaaccattaatgatgtcgttaacatggaaaatctaacggttaacaattttgcattccc |
18372915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University