View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5250_high_6 (Length: 457)
Name: NF5250_high_6
Description: NF5250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5250_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 8 - 438
Target Start/End: Complemental strand, 29714523 - 29714094
Alignment:
| Q |
8 |
agattatacttacttaaatgagtatgctttattacagaaggcagctggcagtatcaacactgagaaaattctgagaaagttcaaattgttagcagtacag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29714523 |
agattatacttacttaaatgagtatgctttattacagaaggcagctggcagtatcaacactgagaaaattctgagaaagttcaaattgttagcagtacag |
29714424 |
T |
|
| Q |
108 |
atacaaaataaagaaagagagataacaaaaacgacggctaaagtttcattagaataacaattgtctaatattacaaattgacatgtattttgaaacgaat |
207 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29714423 |
atacaaaataaagaaagagagataacaaaaacgatggctaaggtttcattagaataacaattgtctaatattacaaattgacatgtattttgaaacgaat |
29714324 |
T |
|
| Q |
208 |
gaagtaacttttttagcatattataaaagaaatactagttacaaacaaaagaatnnnnnnnnngggggaaaaacgaactaaaattcaattttttagagtc |
307 |
Q |
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| T |
29714323 |
ggagtaatttttttagcatattataaaagaaatactagttacaaacaaaagaat-aaaaaatagggggaaaaacgaactaaaattcaattttttagagtc |
29714225 |
T |
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| Q |
308 |
tagatatatatccattttaataagtgaaccctagcataaatctcattaataataaacttaaattttaaggacgcgtttgtttcacggacacaaaagttat |
407 |
Q |
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| T |
29714224 |
tagatatatatccattttaataagtgaaccctagcataaatctcattaataataaacttaaattttaaggacgcgtttgtttcacggacacaaaagttat |
29714125 |
T |
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| Q |
408 |
tcttaggaacaacatatctagaagtatttgt |
438 |
Q |
| |
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| T |
29714124 |
tcttaggaacaacatatctagaagtatttgt |
29714094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 185 - 438
Target Start/End: Original strand, 55801033 - 55801287
Alignment:
| Q |
185 |
ttgacatgtattttgaaacgaatgaagtaacttttttagcatattataaaa-gaaatactagttacaaacaaaagaatnnnnnnnnngggggaaaaacga |
283 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
55801033 |
ttgacatgtattttgaaacagatgaagtaacttttttagcatattataaaaagaaatactagttacaaacaaaagaattaaaaaaaagggggaaaaacga |
55801132 |
T |
|
| Q |
284 |
actaaaattcaattttttagagtctagatatatatccattttaataagtgaaccctagcataaatctcattaataataaacttaaattttaaggacgcgt |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55801133 |
actaaaattcaattttttagagtctagatatatatccattttaataagtgaaccctagcataaatctcattaataataaacttaaattttaaggacgcgt |
55801232 |
T |
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| Q |
384 |
ttgtttcacggacacaaaagttattcttaggaacaacatatctagaagtatttgt |
438 |
Q |
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| T |
55801233 |
ttgtttcacggacacaaaagttattcttaggaagaacatatctagaagtatttgt |
55801287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 37945655 - 37945577
Alignment:
| Q |
106 |
agatacaaaataaagaaagagagataacaaaaacgacggctaaagtttcattagaataacaattgtctaatattacaaa |
184 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||| |||||||||| |||| |||||| ||| |||||||| |
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| T |
37945655 |
agatacaaaataaagaaagagagataacaagaacgacagctagagtttcattaaaatatcaattgattaacattacaaa |
37945577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 92 - 184
Target Start/End: Original strand, 9290582 - 9290672
Alignment:
| Q |
92 |
attgttagcagtacagatacaaaataaagaaagagagataacaaaaacgacggctaaagtttcattagaataacaattgtctaatattacaaa |
184 |
Q |
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||||||| || |||||||||||||||||||||||| ||||||| || |||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
9290582 |
attgttaacaatacagatacaaaataaagaaagag--ataacaagaatgacggctagggtttcattagaataacaattgtctaacattacaaa |
9290672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 28665154 - 28665072
Alignment:
| Q |
103 |
tacagatacaaaataaagaaagagaga-taacaaaaacgacggctaaagtttcattagaataacaattgtctaatattacaaa |
184 |
Q |
| |
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|||||||||||||| ||||||||||| || || ||||||||||| ||||||||||||||||||| | |||||||||||| |
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| T |
28665154 |
tacagatacaaaatggagaaagagagaataggaacaacgacggctagggtttcattagaataacaatagcttaatattacaaa |
28665072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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